Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08480 76 / 3e-17 VQ motif-containing protein (.1.2) AT1G80450 65 / 5e-13 VQ motif-containing protein (.1) AT1G28280 58 / 4e-10 VQ motif-containing protein (.1.2) AT3G15300 56 / 1e-09 VQ motif-containing protein (.1) AT5G53830 53 / 3e-08 VQ motif-containing protein (.1) AT2G33780 44 / 3e-05 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026247 [exp] 279 / 2e-96 AT1G80450 83 / 5e-20 VQ motif-containing protein (.1) Lus10020092 [exp] 153 / 8e-47 AT1G80450 86 / 5e-21 VQ motif-containing protein (.1) Lus10026897 [exp] 105 / 2e-28 AT1G80450 67 / 4e-14 VQ motif-containing protein (.1) Lus10005543 [exp] 55 / 7e-09 AT5G53830 154 / 4e-46 VQ motif-containing protein (.1) Lus10041929 [exp] 47 / 2e-06 AT1G28280 155 / 7e-47 VQ motif-containing protein (.1.2) Lus10015315 [exp] 45 / 1e-05 AT1G28280 203 / 3e-65 VQ motif-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G266700 [exp] 99 / 9e-26 AT1G80450 79 / 1e-18 VQ motif-containing protein (.1) Potri.006G266600 [exp] 91 / 1e-22 AT1G80450 61 / 6e-12 VQ motif-containing protein (.1) Potri.018G016500 [exp] 81 / 8e-19 AT1G80450 67 / 6e-14 VQ motif-containing protein (.1) Potri.001G399100 [exp] 69 / 5e-14 AT1G28280 190 / 2e-60 VQ motif-containing protein (.1.2) Potri.011G118200 [exp] 65 / 1e-12 AT1G28280 184 / 6e-58 VQ motif-containing protein (.1.2) Potri.004G134200 [exp] 64 / 1e-12 AT5G08480 150 / 1e-46 VQ motif-containing protein (.1.2) Potri.011G053700 [exp] 55 / 6e-09 AT1G28280 213 / 6e-69 VQ motif-containing protein (.1.2) Potri.004G044800 [exp] 51 / 1e-07 AT1G28280 223 / 1e-72 VQ motif-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10042423 pacid=23153884 polypeptide=Lus10042423 locus=Lus10042423.g ID=Lus10042423.BGIv1.0 annot-version=v1.0 ATGGGAACGGAGACCCGCCGCCACGTGGTGACGACAATGACCACGACGAAGACGGCGGCGTTACCACCGCCCTCCCCTATCTCATCCACCACCTTCGTCC AAGCCGACGCGGCAACGTTCCGAGAACTCGACCAGAAGCTAACTGGTTTAGCTCCCGACGCTGACGCCAAGTTCCCGGTGACTCTCCCTTCCAGGACTGC TAAACAGGCTGCCAATCATCACCATATCAACGGTAATAGTAGCCCCATAAACTCGCCGAGGAGGTCGTCGTTCAAGCTCCAGGAACGGCGGCACACGATT CGAAAGCTTGAAATCAAGCTGAGCAGAGCGTCTCTCCGGAATAATAGTTCTGGAACGAGCCCGTGTTCTTCCCCGGGGAATTGCTTCTTGGCGGAGTCTC CGATTGCCAGCCCCGTGACGCCGCTGATGGCTTCCGGGGCAGCTGACTCGCCATTCTTTTCCAGCACGGAGACGTCGCCGTCGACGGAGGAAGAAAGGGC GATTGCGGAGAAGAGGTTTTATCTGCACCCGTCTCCGTTGAGTACGCCGCGCGGTGGGAGCGAGGCGCCCGAGCTGCTTACTCTGTTTCCCCTGACTTCT CCCCACGCTAAGCAGGAACGATGA
AA sequence Show only first row Show all	>Lus10042423 pacid=23153884 polypeptide=Lus10042423 locus=Lus10042423.g ID=Lus10042423.BGIv1.0 annot-version=v1.0 MGTETRRHVVTTMTTTKTAALPPPSPISSTTFVQADAATFRELDQKLTGLAPDADAKFPVTLPSRTAKQAANHHHINGNSSPINSPRRSSFKLQERRHTI RKLEIKLSRASLRNNSSGTSPCSSPGNCFLAESPIASPVTPLMASGAADSPFFSSTETSPSTEEERAIAEKRFYLHPSPLSTPRGGSEAPELLTLFPLTS PHAKQER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80450			VQ motif-containing protein (....		Lus10042423 [exp]	0	1
AT3G50910			unknown protein		Lus10028325 [exp]	5.5	0.9592
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	6.7	0.9656
AT2G47485			unknown protein		Lus10033571 [exp]	18.1	0.9499
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035480 [exp]	18.7	0.9501
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10018243 [exp]	21.9	0.9500
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10025732 [exp]	22.2	0.9415
					Lus10000859 [exp]	22.4	0.9517
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035479 [exp]	22.8	0.9475
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10017522 [exp]	26.5	0.9506
AT1G74360			Leucine-rich repeat protein ki...		Lus10003478 [exp]	28.2	0.9170

Compare expression of checked genes

Lus10042423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.