Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24820 676 / 0 AtTic55, TIC55-II, TIC55 translocon at the inner envelope membrane of chloroplasts 55-II (.1) AT4G25650 159 / 3e-42 TIC55-IV, PTC52, ACD1-LIKE TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) AT3G44880 147 / 3e-38 PAO, LLS1, ACD1 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) AT1G44446 96 / 7e-21 ATCAO, CH1 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) AT4G29890 42 / 0.0007 choline monooxygenase, putative (CMO-like) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026246 [exp] 1034 / 0 AT2G24820 692 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Lus10025414 [exp] 183 / 6e-51 AT4G25650 592 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015284 [exp] 179 / 2e-49 AT4G25650 537 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015283 [exp] 174 / 1e-47 AT4G25650 621 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025412 [exp] 171 / 2e-46 AT4G25650 574 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025415 [exp] 167 / 4e-45 AT4G25650 689 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015287 [exp] 167 / 6e-45 AT4G25650 568 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015288 [exp] 166 / 1e-44 AT4G25650 697 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10013915 [exp] 157 / 9e-42 AT4G25650 619 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G015700 [exp] 738 / 0 AT2G24820 778 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Potri.006G267300 [exp] 701 / 0 AT2G24820 745 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Potri.003G219000 [exp] 174 / 9e-48 AT4G25650 667 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005900 [exp] 173 / 2e-47 AT4G25650 731 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219400 [exp] 166 / 7e-45 AT4G25650 672 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005700 [exp] 164 / 3e-44 AT4G25650 634 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219550 [exp] 164 / 3e-44 AT4G25650 664 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G218900 [exp] 157 / 9e-42 AT4G25650 639 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.004G217200 [exp] 146 / 7e-38 AT3G44880 758 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.009G004100 [exp] 128 / 1e-31 AT3G44880 612 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF08417 [flax] [poplar] PaO Pheophorbide a oxygenase CL0516 [flax] [poplar] ISP-domain PF00355 [flax] [poplar] Rieske Rieske [2Fe-2S] domain
Representative CDS sequence Show only first row Show all	>Lus10042424 pacid=23153476 polypeptide=Lus10042424 locus=Lus10042424.g ID=Lus10042424.BGIv1.0 annot-version=v1.0 ATGGCCTTGTCATCATCATCCTCATCCTTTCACCAATTCCTCTCCCACAGAGCCTCCTCCCGATCCCCTACTTTCTCTCCCCCGCCTGCCGCCGCGATCA CCGTCTCCTCCAAGTCTCATTTCCTCATGCAACAACTCAAGGCCCGCCGCTTCGACAAGTGCCACGCGATGACCACCTCGCCTTCCTCCAATTCGGCTCT GGACGACGATGGCGGAGTGTTGTACGGAGATCCGGCGACCGAAGAGGAACGGAGCGGGGAGAGAGTAGCGGTGGCGGATTATGACTGGACGGAGGAATGG TATCCTCTCTACCTCACTAAGGACGTTCCAGATGATGCTCCTTTAGGCCTCACCGTGTTCGATAAGCAGGTTGTGGTCTATAAAGACGGACAAGGTCAGA TCCGTTGCTATGAAGATCGATGCCCTCATAGGTTGGCTAAGCTCTCAGAAGGTCAGATTTTAGATGGGAAGCTTGAGTGTCTATATCATGGCTGGCAATT TGAAGGGGATGGTAAATGTGTGAAGATACCTCAGCTTCCTGCAGGGAGCAAGATTCCTAAATCAGCCTGCGTCCAAGCTTACCAAGTGAAAGATTCTCAA GGAATCTTGTGGGTTTGGATGTCTCCAAAAACTGAACCTAATGTGAAGAAGCTACCATGGTTTGAATCGGTGGACAAGCCAGGGTATCAATCGGTCTCGA CCATCCACGAGCTTCCTTACGATCACTCCATACTTCTGGAGAATCTTATGGACCCTGCTCACATCCCAATCTCCCATGAAGGGACAGACACCTCCACGAG TAGGGCAGAGGCTCAGGCGCTAGTCTTTCAGGTCACGGAGAGGTCTGATCGAGGTTTCGCAGGGTATTGGGGGAAGGAAGCTGACGGGGTGACATCCTTC TTACGGTTTCAAGCTCCTTGCGTCATGTCGAATGTGAGGGAATTTACCAACGAGCAAGGGCAGAAACATTACTTCACCGGCTTGTTTCTGTGTAGACCGG CAGGGCAGGGGAAATCAATGGTGATTGTGCAATTTGGAACTACAAGAGGTTTCAAGGCAGCAAAATGGATACCGACATGGTTCGTACATAACCTCTCTTG CAAGATATTTGAACAGGACATGGGATTTCTATCGTCTCAGAACGAGGTTCTGATGAAGGAAAAAGTTCCCACTAGAAAGCTGTACATAAACTTGAGATCT TCCGATACGTGGGTGCTGGAGTACCGGAAATGGATGGATAAAGTTGGCCACGGAATGCCTTACCATATGGGGCACAGCACAATTTCTCTGCCTCAAGTCC AAGCTGTTGTGGAGCATGCACCGGCGGGGTTTCTGGCAGGGTCCTCTTCAGCTTTGCCGGCTAAAGGGGCGCTCGCGGAGTTGCACGCTCCTAACTTGAC AAGTCGTTATTTCAGGCATGTGGTTCACTGCAAGGAATGCTTGAGTGCTGTCAAGACATTCAGTGCTGCTAAAAAGGTTCTCTCGGTAGTAGCTGTGGCC CTGGCCGGGTTGGCTATCCTCGCATCGCAGAGGCAGTGGAAGATCTTTCTCTTAGTATCGGCGAGCTTGTGCTTTGGTGGAGCGCAGTTGTGCGCTACGG CTCTCTCTAGCAAGACCACCAATTTCATAAGATCACACAGGAGATAA
AA sequence Show only first row Show all	>Lus10042424 pacid=23153476 polypeptide=Lus10042424 locus=Lus10042424.g ID=Lus10042424.BGIv1.0 annot-version=v1.0 MALSSSSSSFHQFLSHRASSRSPTFSPPPAAAITVSSKSHFLMQQLKARRFDKCHAMTTSPSSNSALDDDGGVLYGDPATEEERSGERVAVADYDWTEEW YPLYLTKDVPDDAPLGLTVFDKQVVVYKDGQGQIRCYEDRCPHRLAKLSEGQILDGKLECLYHGWQFEGDGKCVKIPQLPAGSKIPKSACVQAYQVKDSQ GILWVWMSPKTEPNVKKLPWFESVDKPGYQSVSTIHELPYDHSILLENLMDPAHIPISHEGTDTSTSRAEAQALVFQVTERSDRGFAGYWGKEADGVTSF LRFQAPCVMSNVREFTNEQGQKHYFTGLFLCRPAGQGKSMVIVQFGTTRGFKAAKWIPTWFVHNLSCKIFEQDMGFLSSQNEVLMKEKVPTRKLYINLRS SDTWVLEYRKWMDKVGHGMPYHMGHSTISLPQVQAVVEHAPAGFLAGSSSALPAKGALAELHAPNLTSRYFRHVVHCKECLSAVKTFSAAKKVLSVVAVA LAGLAILASQRQWKIFLLVSASLCFGGAQLCATALSSKTTNFIRSHRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10042424 [exp]	0	1
AT5G50100			Putative thiol-disulphide oxid...		Lus10004232 [exp]	1.4	0.9221
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	3.3	0.9300
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10007586 [exp]	4.5	0.9157
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10014934 [exp]	4.9	0.9183
AT1G22750			unknown protein		Lus10028718 [exp]	7.5	0.9005
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039301 [exp]	8.9	0.8999
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10030141 [exp]	9.5	0.9063
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Lus10037808 [exp]	10.4	0.9044
AT1G50250		FTSH1	FTSH protease 1 (.1)		Lus10012277 [exp]	11.0	0.8904
					Lus10017075 [exp]	11.0	0.8951

Compare expression of checked genes

Lus10042424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.