Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10770 554 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G10760 410 / 7e-140 Eukaryotic aspartyl protease family protein (.1) AT1G79720 288 / 5e-92 Eukaryotic aspartyl protease family protein (.1) AT1G01300 240 / 2e-73 Eukaryotic aspartyl protease family protein (.1) AT3G61820 234 / 2e-71 Eukaryotic aspartyl protease family protein (.1) AT3G20015 226 / 2e-68 Eukaryotic aspartyl protease family protein (.1) AT1G25510 218 / 5e-65 Eukaryotic aspartyl protease family protein (.1) AT3G18490 210 / 3e-62 Eukaryotic aspartyl protease family protein (.1) AT2G03200 191 / 3e-55 Eukaryotic aspartyl protease family protein (.1) AT3G59080 184 / 4e-52 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042427 [exp] 614 / 0 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1) Lus10026244 [exp] 439 / 5e-151 AT5G10770 303 / 5e-98 Eukaryotic aspartyl protease family protein (.1) Lus10026243 [exp] 404 / 6e-138 AT5G10770 287 / 2e-92 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 313 / 1e-101 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10038732 [exp] 246 / 1e-76 AT5G10770 210 / 5e-63 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 245 / 2e-75 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024098 [exp] 228 / 2e-69 AT1G79720 399 / 4e-136 Eukaryotic aspartyl protease family protein (.1) Lus10026906 [exp] 209 / 8e-63 AT5G10760 182 / 9e-53 Eukaryotic aspartyl protease family protein (.1) Lus10020100 [exp] 201 / 6e-60 AT5G10770 190 / 7e-56 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G015100 [exp] 566 / 0 AT5G10770 483 / 5e-168 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 464 / 3e-161 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 433 / 1e-148 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 428 / 6e-147 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 427 / 2e-146 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 399 / 1e-135 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1) Potri.018G014500 [exp] 368 / 2e-123 AT5G10760 329 / 3e-108 Eukaryotic aspartyl protease family protein (.1) Potri.006G232500 [exp] 367 / 2e-123 AT5G10770 334 / 2e-110 Eukaryotic aspartyl protease family protein (.1) Potri.018G014800 [exp] 328 / 8e-108 AT5G10770 312 / 9e-102 Eukaryotic aspartyl protease family protein (.1) Potri.003G185175 [exp] 320 / 2e-104 AT1G79720 523 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10042426 pacid=23153758 polypeptide=Lus10042426 locus=Lus10042426.g ID=Lus10042426.BGIv1.0 annot-version=v1.0 ATGACAAATATTGCTTCTATCATCCTCCTCCTCCTATCTCTTAGCTTCTTTTCTCTGGCCATCAATGGCGACGAGCATGAGCAGCATAGTAATTTCCACA CAATTCAGCTCTCCTCTCTGTTTCCATCTGATTCTTGCTCCAGCCCTTCTTCACCCACAGGGTTGAAAAACGAGGCATCTCTGCTGCAAGTGGTTCACAA ACATGGGCCATGCGCTCAGGCCCAGCAGCTAACCGCCCAACAACACAAACCCAGCCCAGATGAAGTCCTTCGCCAGGACCAATCCAGGGTCAAGTCAATC CACTCCAAGACGAGGAAAGCCGCTGGGAATGATGTCAGCGTCACGGAATCCACCACCATTCCGGCCAAGGACGGCAGCACCGTCGGCTCCGGCAACTACA TCGTCACCGTCGGGCTGGGCACTCCGGCCAAGCAACTATCTCTAATATTTGACACCGGGAGCGACGTGACGTGGACTCAGTGTCAACCTTGTGTCAGAGC ATGCTACCAGCAACAGGAGAGGATCTTCGAGCCCACCCAGTCCACTTCTTATCGAAACGTTTCCTGCGAGCAAGCCGTTTGCGCCGCCCTTTCTTCCGCT ACCGGAAACAATGGGGGATGTTCATCCTCGACATGCGTGTACGGGATCCAATACGGAGACTCTTCATTCTCAGTAGGCTTCTTCGCCTCAGAGAAACTCA CCTTGACATCAACTGACGTCTTCGACGAATTCTACTTCGGATGCGGCGAAAACAACCAAGGAAACTTCGGCGGCGCCGCCGGATTGATCGGCTTGGGAAG AGACAAACTATCCCTAGTCTCTCAAACCTCCGACAAATACAACAAGCTCTTCTCCTACTGCCTACCGTCCACCGCCTCATCTACCGGCTACCTCTCCTTC GGGGCCACCGCCTCCACCACCAAATCCCCCACCATTTACACTCCCATCTCCACAGGCTCCGGCGCAGCCAACTTCTACGGCCTGGACATCACGGCTATCA GCGTCGGCGGTCGTAAGCTCCCGGTCTCCGCCTCCGTCTTCTCCACTGCCAAGGCCATCATTGACTCTGGCACCGTCATCACCCGCCTCCCGCCGGCTGC CTACTCCGCCCTCCGGACGGCGTTCCGGCAGCAGATGTCTAGGTACCCCACGGCCCCGGCGCTGTCTATCCTAGACACGTGCTACGACCTCACCAAGTAC AAGTCCGTTACGGTGCCGAAGATCGGATTCTTCTTCGCCGGCGGCGCCGAGGTGGACATTCAGTCCGTCGGGATTCTTTACGCAAGCAAGGTGTCGCAGG TGTGTCTGGCTTTCGCCGGGAATGGGGATGCGGGTGACGTGGCAATTTTCGGAAACGTGCAGCAACAGACGCTGGAGGTGATTTACGACGGCGCCGCCGG GAAGATTGGGTTTGCCAGCGGTGGGTGTAGCTGA
AA sequence Show only first row Show all	>Lus10042426 pacid=23153758 polypeptide=Lus10042426 locus=Lus10042426.g ID=Lus10042426.BGIv1.0 annot-version=v1.0 MTNIASIILLLLSLSFFSLAINGDEHEQHSNFHTIQLSSLFPSDSCSSPSSPTGLKNEASLLQVVHKHGPCAQAQQLTAQQHKPSPDEVLRQDQSRVKSI HSKTRKAAGNDVSVTESTTIPAKDGSTVGSGNYIVTVGLGTPAKQLSLIFDTGSDVTWTQCQPCVRACYQQQERIFEPTQSTSYRNVSCEQAVCAALSSA TGNNGGCSSSTCVYGIQYGDSSFSVGFFASEKLTLTSTDVFDEFYFGCGENNQGNFGGAAGLIGLGRDKLSLVSQTSDKYNKLFSYCLPSTASSTGYLSF GATASTTKSPTIYTPISTGSGAANFYGLDITAISVGGRKLPVSASVFSTAKAIIDSGTVITRLPPAAYSALRTAFRQQMSRYPTAPALSILDTCYDLTKY KSVTVPKIGFFFAGGAEVDIQSVGILYASKVSQVCLAFAGNGDAGDVAIFGNVQQQTLEVIYDGAAGKIGFASGGCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10770			Eukaryotic aspartyl protease f...		Lus10042426 [exp]	0	1
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Lus10037608 [exp]	5.7	0.7799
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10035933 [exp]	12.7	0.7598
AT4G15470			Bax inhibitor-1 family protein...		Lus10041240 [exp]	19.3	0.7212
AT3G52470			Late embryogenesis abundant (L...		Lus10021286 [exp]	19.7	0.7642
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10018939 [exp]	19.9	0.7399
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Lus10024914 [exp]	22.0	0.7209
AT1G22540			Major facilitator superfamily ...		Lus10009462 [exp]	22.2	0.7286
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10020283 [exp]	22.4	0.7444
AT5G65205			NAD(P)-binding Rossmann-fold s...		Lus10040878 [exp]	24.2	0.7466
AT4G15470			Bax inhibitor-1 family protein...		Lus10021950 [exp]	25.8	0.7515

Compare expression of checked genes

Lus10042426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.