Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10770 435 / 9e-149 Eukaryotic aspartyl protease family protein (.1) AT5G10760 345 / 9e-114 Eukaryotic aspartyl protease family protein (.1) AT1G79720 255 / 6e-79 Eukaryotic aspartyl protease family protein (.1) AT3G20015 207 / 1e-60 Eukaryotic aspartyl protease family protein (.1) AT3G61820 204 / 2e-59 Eukaryotic aspartyl protease family protein (.1) AT1G01300 200 / 6e-58 Eukaryotic aspartyl protease family protein (.1) AT1G25510 194 / 1e-55 Eukaryotic aspartyl protease family protein (.1) AT3G18490 191 / 1e-54 Eukaryotic aspartyl protease family protein (.1) AT5G33340 173 / 3e-48 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT2G42980 174 / 4e-48 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042426 [exp] 602 / 0 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10026243 [exp] 491 / 2e-171 AT5G10770 287 / 2e-92 Eukaryotic aspartyl protease family protein (.1) Lus10026244 [exp] 322 / 2e-104 AT5G10770 303 / 5e-98 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 251 / 7e-77 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 196 / 3e-56 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10038732 [exp] 193 / 6e-56 AT5G10770 210 / 5e-63 Eukaryotic aspartyl protease family protein (.1) Lus10024098 [exp] 185 / 8e-53 AT1G79720 399 / 4e-136 Eukaryotic aspartyl protease family protein (.1) Lus10010157 [exp] 181 / 1e-50 AT3G20015 545 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 176 / 2e-49 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G015100 [exp] 462 / 4e-159 AT5G10770 483 / 5e-168 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 392 / 4e-132 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 375 / 3e-125 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 373 / 9e-125 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 373 / 2e-124 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 324 / 2e-105 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1) Potri.006G232500 [exp] 307 / 2e-99 AT5G10770 334 / 2e-110 Eukaryotic aspartyl protease family protein (.1) Potri.018G014500 [exp] 298 / 3e-95 AT5G10760 329 / 3e-108 Eukaryotic aspartyl protease family protein (.1) Potri.001G041700 [exp] 272 / 5e-84 AT1G79720 521 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014800 [exp] 266 / 2e-83 AT5G10770 312 / 9e-102 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10042427 pacid=23153825 polypeptide=Lus10042427 locus=Lus10042427.g ID=Lus10042427.BGIv1.0 annot-version=v1.0 ATGCCAAAATCCATTGCAAGTGTGTTTGGTTATAAAAAGCGAGTGACAGTATTGCCCACTCAGACACCACAAATCGGGATTGGGTTACTGCCTCAGAAGA ACACAATAATGGCAGTTGCTTCCACTACTTCCCTCTTCTCCTTCACCACCCTCCTCCTCCTCCTTGTAGCTCTTAGCTTCTTTTCTCAGCCCATCAATGG CGACGAGCAGCATGATTTCCACACCATTCAGCTCTCCTCTCTGTTCCAATCTCAATCTTGCTCTGGCGCCCCTTCTTCTTCTTCTTCTTCAACCAAAGGG TTGAAGAACGAGGCATCTCTGCTGGAAGTGGTTCACAAACATGGGCCATGCGCCAAGGCCCAACAAGGCAAACCCAGCCTAGACGAAATCCTTCTCCAGG ACCAGTCCAGGGTTAAGGCAATCCACTCCAGGTCCAGAAAAGCCTTCGGGAGTGACGTCGGCGTCACCAAATCCCCCACCATCCCCGCCAAGGACGGCAG TCTCATCGGTGCCGGGGACTACATCGTCACTGTCGGTCTGGGCACTCCCGTAAAAAAACTATCTTTGATCTTGGACACTGGGACAGATCTGACGTGGACT CAGTGCAAACCTTGCGTGAAATCATGCTACAAACAAAAGGAAAAGATGTTCGAACCCTCCCAGTCCACTTCTTACCAAAACGTCTCCTGCGAGCGCGCCG CTTGCTCCGCCCTTGCTTCCGCCACCGGATTTAGGGATTGTTCATCGTCGACATGCGCGTACGAGGTCAAATACGGAGACTCCTCATTCTCAAAAGGCTT ATTCGCTTCAGACAAACTCACCTTGACATCAGCTGATGGCATTGACGACTTCAACTTCGGTTGCGGCCAAAACAACCAAGGAAAGGACTTCGCCGGTGCT GCCGGATTGCTCGGCTTGGGCAGAAACTCAATATCCCTTCTCGGTCAAACCTCCGACAAATACAAAAAGCTCTTCTCCTACTGCCTCCCTTCCACCGCCT CATCTACCGGCTACCTCTCCTTTGGCGCCACCGCCTCTACCACCAAATCCCCCATAGTCTACACTCCGATCACTGGCGATGCCACCACATACGGGCTGAG CATCACCGCCATCAGCGTCGGCGGGAGCAAGCTTCCGATCCCCGCCTCCGTATTCTCGACCGCCAAGGCCATCATTGACTCCGGCGCCGCCATCACCCGC CTCCCGCCGGCGGCCTACTCCGCCCTCCGCTTGGCGTTTAAGAATAAGATGTCTGATTACCCTATGGCGCCGGCGCTGTCCATCCTGGACACCTGCTACG ACCTCAGCAAGGCTAAGGACGTGAAGGTTCCGAAGATCGGGTTCTTCTTCGCAGGCGGTGCTGAGGTGGAGATTCAGTCTGTCGGGATTCTCTACGGCAG CAAGGCGTCGCAGATGTGTCTGGCGTTCGCCGGGAATGCGAAGGCGACTGATGTGGCGATTTTTGGGAGCGTGCAGCAGAAGACGATGGAGGTGGTTTAC GACGGTGCCGGTGGGAGGGTTGGGTTCGGCAGGGGGGGGTGGCGCCAGGGGTGGTTGCAGCTGAACGACGCCGTGGTTGGGTAA
AA sequence Show only first row Show all	>Lus10042427 pacid=23153825 polypeptide=Lus10042427 locus=Lus10042427.g ID=Lus10042427.BGIv1.0 annot-version=v1.0 MPKSIASVFGYKKRVTVLPTQTPQIGIGLLPQKNTIMAVASTTSLFSFTTLLLLLVALSFFSQPINGDEQHDFHTIQLSSLFQSQSCSGAPSSSSSSTKG LKNEASLLEVVHKHGPCAKAQQGKPSLDEILLQDQSRVKAIHSRSRKAFGSDVGVTKSPTIPAKDGSLIGAGDYIVTVGLGTPVKKLSLILDTGTDLTWT QCKPCVKSCYKQKEKMFEPSQSTSYQNVSCERAACSALASATGFRDCSSSTCAYEVKYGDSSFSKGLFASDKLTLTSADGIDDFNFGCGQNNQGKDFAGA AGLLGLGRNSISLLGQTSDKYKKLFSYCLPSTASSTGYLSFGATASTTKSPIVYTPITGDATTYGLSITAISVGGSKLPIPASVFSTAKAIIDSGAAITR LPPAAYSALRLAFKNKMSDYPMAPALSILDTCYDLSKAKDVKVPKIGFFFAGGAEVEIQSVGILYGSKASQMCLAFAGNAKATDVAIFGSVQQKTMEVVY DGAGGRVGFGRGGWRQGWLQLNDAVVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10770			Eukaryotic aspartyl protease f...		Lus10042427 [exp]	0	1
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10007016 [exp]	5.3	0.9070
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10006672 [exp]	10.4	0.9053
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10005264 [exp]	12.0	0.8866
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10020990 [exp]	13.5	0.8981
AT4G23940			FtsH extracellular protease fa...		Lus10023066 [exp]	14.1	0.9023
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10019619 [exp]	14.4	0.9005
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10014278 [exp]	15.9	0.8988
AT4G16490			ARM repeat superfamily protein...		Lus10014691 [exp]	17.2	0.8915
AT3G61690			nucleotidyltransferases (.1)		Lus10030265 [exp]	17.5	0.9002
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10038140 [exp]	19.6	0.8817

Compare expression of checked genes

Lus10042427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.