Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10750 416 / 5e-147 Protein of unknown function (DUF1336) (.1) AT5G24990 310 / 2e-105 Protein of unknown function (DUF1336) (.1) AT5G25010 305 / 1e-103 Protein of unknown function (DUF1336) (.1) AT5G25020 269 / 1e-89 Protein of unknown function (DUF1336) (.1) AT1G06050 228 / 4e-73 Protein of unknown function (DUF1336) (.1) AT5G45560 199 / 6e-58 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT4G19040 195 / 1e-56 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G35180 179 / 2e-50 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT2G28320 154 / 9e-42 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT3G54800 152 / 5e-41 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026242 [exp] 501 / 2e-180 AT5G10750 440 / 1e-156 Protein of unknown function (DUF1336) (.1) Lus10026907 [exp] 443 / 7e-158 AT5G10750 416 / 1e-147 Protein of unknown function (DUF1336) (.1) Lus10008154 [exp] 246 / 5e-80 AT1G06050 362 / 5e-126 Protein of unknown function (DUF1336) (.1) Lus10007596 [exp] 199 / 6e-58 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10012149 [exp] 198 / 9e-58 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10019591 [exp] 173 / 2e-48 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10040015 [exp] 173 / 3e-48 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019068 [exp] 166 / 9e-47 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10020102 [exp] 153 / 1e-46 AT5G10750 154 / 1e-47 Protein of unknown function (DUF1336) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G014234 [exp] 416 / 8e-147 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1) Potri.017G027700 [exp] 230 / 8e-74 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1) Potri.007G130400 [exp] 222 / 1e-70 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1) Potri.008G213000 [exp] 203 / 2e-59 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.003G100600 [exp] 193 / 7e-56 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.001G132900 [exp] 192 / 1e-55 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.018G113100 [exp] 172 / 5e-48 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.008G038800 [exp] 164 / 2e-45 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.010G223400 [exp] 163 / 4e-45 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.009G011200 [exp] 160 / 6e-44 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10042428 pacid=23153809 polypeptide=Lus10042428 locus=Lus10042428.g ID=Lus10042428.BGIv1.0 annot-version=v1.0 ATGAGCCCATCCAAACAGAAGCACCGGAGCTCCGCCTCCGCCGTTTCCAGATCTATTTCCAAGGTCGGGATTCCCGACGCCGACTCCGCCACAACCATAA GCTCCACCGCTCCCGATTGGATCGCGGAGTCAATCAACGGCGGATCTCTCCGCCACGTAGACCTCGACAACGGAACCAACGGCTGGTCTTCACCTCCCGG TAACCTATTCTCTCTCCGCTCTAAGAATTACTTTAACAAGAAACAAAAATCCCCCGCGGGAGACTACCTGCTCTCCCCTGCCGGCATGGATTGGCTAAAG TCCACCACCAAACTCGACAACGTACTCGGCCACCCGGACAATCGAGTCGCTCAGGCCCTCCGCAAGGCGCAATCGGAAGGGAGATCGCTCAAGAGCTTCG TATTCGCGGTGAACCTCCAGGTCCCGGGGAAAGACCAACACAGCGCGGTCTTCTACTTCGCGGCTCCAGATCCGATTCCTCCGGGGAGCCTCCTGCACAA ATTCATGTACGGCGACGACGCGTACCGGAATCAGCGATTCAAAATCGTGAATCGGATAGTGAAAGGGCCGTGGGTGGTACGGAAAACAGTGGGGAATTAC AACGCGTGCCTGCTGGGGAAGGCTCTAACCTGCAATTACCACAGAGGTCCTAACTATTTGGAGATCGACGTCGACATAGGTAGCTCCGCCATAGCGACGG CGATCCTGCACGTGGCGTTGGGATGCGTGACGAGCGTGAAGATCGACATGGGGTTCGTGGTGGAGGCGCAGGAGGAGGAAGAGTTGCCAGAGAGATTAAT CGGGGCGGTCAGGGTGTGTCAGATGGAAATGTCGTCGGCGGAGGTGGTGGAAACGCAGGGGGTGTCGCCGACGGTGGTAGGAGGGCGTGGGATAGGGTTG GCTCAGGTCAACCACCATGAATCCGGAGAAGAGGAAGAGGACGATGATGATTGCAAGGAGGATGGTAATAATAAGACAAAACTGTAA
AA sequence Show only first row Show all	>Lus10042428 pacid=23153809 polypeptide=Lus10042428 locus=Lus10042428.g ID=Lus10042428.BGIv1.0 annot-version=v1.0 MSPSKQKHRSSASAVSRSISKVGIPDADSATTISSTAPDWIAESINGGSLRHVDLDNGTNGWSSPPGNLFSLRSKNYFNKKQKSPAGDYLLSPAGMDWLK STTKLDNVLGHPDNRVAQALRKAQSEGRSLKSFVFAVNLQVPGKDQHSAVFYFAAPDPIPPGSLLHKFMYGDDAYRNQRFKIVNRIVKGPWVVRKTVGNY NACLLGKALTCNYHRGPNYLEIDVDIGSSAIATAILHVALGCVTSVKIDMGFVVEAQEEEELPERLIGAVRVCQMEMSSAEVVETQGVSPTVVGGRGIGL AQVNHHESGEEEEDDDDCKEDGNNKTKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10750			Protein of unknown function (D...		Lus10042428 [exp]	0	1
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Lus10036644 [exp]	1.0	0.8928
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10013769 [exp]	1.4	0.8897
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10004121 [exp]	3.0	0.8735
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10005161 [exp]	4.6	0.8637
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10008652 [exp]	5.5	0.8300
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10022199 [exp]	5.9	0.8711
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Lus10009373 [exp]	8.5	0.8368
AT3G02910			AIG2-like (avirulence induced ...		Lus10018276 [exp]	9.8	0.8068
AT3G11780			MD-2-related lipid recognition...		Lus10013366 [exp]	10.4	0.8712
					Lus10035642 [exp]	10.7	0.8707

Compare expression of checked genes

Lus10042428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.