Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36700 475 / 1e-168 ATPGLP1, 2-PHOSPHOGLYCOLATEPHOSPHATASE1 2-phosphoglycolate phosphatase 1 (.1.2.3.4) AT5G36790 475 / 1e-168 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT5G47760 352 / 3e-121 ATPK5, ATPGLP2 2-phosphoglycolate phosphatase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026241 [exp] 546 / 0 AT5G36700 536 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4) Lus10039102 [exp] 365 / 5e-126 AT5G47760 497 / 2e-179 2-phosphoglycolate phosphatase 2 (.1) Lus10038761 [exp] 332 / 2e-113 AT5G47760 439 / 4e-157 2-phosphoglycolate phosphatase 2 (.1) Lus10033024 [exp] 232 / 3e-75 AT5G47760 288 / 1e-98 2-phosphoglycolate phosphatase 2 (.1) Lus10038760 [exp] 225 / 1e-72 AT5G47760 305 / 1e-105 2-phosphoglycolate phosphatase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G180400 [exp] 493 / 1e-175 AT5G36700 514 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4) Potri.008G077400 [exp] 488 / 2e-173 AT5G36700 508 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4) Potri.016G004200 [exp] 374 / 7e-130 AT5G47760 516 / 0.0 2-phosphoglycolate phosphatase 2 (.1) Potri.006G003501 [exp] 72 / 5e-16 AT5G47760 96 / 9e-26 2-phosphoglycolate phosphatase 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042429 pacid=23153733 polypeptide=Lus10042429 locus=Lus10042429.g ID=Lus10042429.BGIv1.0 annot-version=v1.0 ATGCTAGCCAGGGCAGCAGTGTCAGTCGCTTCCACCTCCACCACCGTCGCCGCCGTCTGCTGTCATCCTTTTCTTAACCCCTCAAAACGCCTCTCATTTC TCCCTCCCACTCCTTCAACCAAATGGTATCCCAATCCTGATCATCGCACCACCATCGTCATCTCACAAAACCACCAATCTCGCCGTGCAATTATGGAGAG TTTCAAGACTAGAGCAGCATCCTCAGTACCGGCTCCGCAGTTGGACAACGCCGACGCACTCATCGACTCCGTCGAGACCTTCATCTTCGATTGCGACGGA GTCATATGGAAAGGAGATAAGCTGATCGAGGGAGTTCCTGAGACGCTTGACATGCTCCGATCCAGAGGGAAGAGATTAGTATTTGTGACTAATAACTCTA CCAAGTCAAGGAAGCAGTACGGTAAAAAGTTCGAGAGTTTAGGTCTCACCGTCAGCGAGGAAGAGATTTTTGCGTCCTCCTTCGCTGCTGCTGCTTACTT GAAGTCCATTGATTTCCCCAAAGATAAGAAGGTTTATGTAATTGGCGAGGAAGGGATCTTGAAGGAGCTGGAGCTTGCTGGAATTCAGTACCTTGGTGGC CCTGGGGACGGTGACAAGAAGATTGAGCTGAAGCCAGGGTATCTACTGGAGCATGACAAAGATGTTGGAGCTGTGGTGGTTGGATTCGACCGTTATTTCA ACTACTACAAAGTCCAGTATGGAACTCTTTGCATAAGGGAAAATCCTGGATGTCTCTTCATCGCCACGAATCGTGATGCTGTCACTCACCTCACAGATGC TCAGGAATGGGCAGGGGGTGGTTCCATGGTTGGTGCTGTTCTAGGATCAACTAAGAAGGAGCCCTTGGTTGTGGGAAAGCCCTCTACTTTCATGATGGAT TACTTGGCAAACGAGTTCGGGATAACCAAGTCCCAGATATGCATGGTAGGGGACAGATTGGACACCGATATTCTTTTCGGACAGAACGGTGGTTGTAAAA CTCTGCTTGTACTCTCAGGTGTAACCTCATTGTCAATGCTGCAAAGCCCCAGCAACTCCATCCAGCCAGATTTCTACACTAACAAGATATCCGACTTCCT TTCTCTGAAAGCTGCGCCTGTATGA
AA sequence Show only first row Show all	>Lus10042429 pacid=23153733 polypeptide=Lus10042429 locus=Lus10042429.g ID=Lus10042429.BGIv1.0 annot-version=v1.0 MLARAAVSVASTSTTVAAVCCHPFLNPSKRLSFLPPTPSTKWYPNPDHRTTIVISQNHQSRRAIMESFKTRAASSVPAPQLDNADALIDSVETFIFDCDG VIWKGDKLIEGVPETLDMLRSRGKRLVFVTNNSTKSRKQYGKKFESLGLTVSEEEIFASSFAAAAYLKSIDFPKDKKVYVIGEEGILKELELAGIQYLGG PGDGDKKIELKPGYLLEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAVLGSTKKEPLVVGKPSTFMMD YLANEFGITKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPSNSIQPDFYTNKISDFLSLKAAPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10042429 [exp]	0	1
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Lus10006931 [exp]	1.0	0.9848
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10018521 [exp]	2.0	0.9834
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10039739 [exp]	2.4	0.9784
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10029559 [exp]	3.2	0.9723
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Lus10012243 [exp]	3.3	0.9526
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Lus10014669 [exp]	3.5	0.9746
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10039629 [exp]	4.9	0.9703
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Lus10027764 [exp]	5.0	0.9414
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10026241 [exp]	5.3	0.9682
AT1G18060			unknown protein		Lus10017999 [exp]	5.7	0.9659

Compare expression of checked genes

Lus10042429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.