Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31750 449 / 5e-161 WIN2 HOPW1-1-interacting 2 (.1) AT5G24940 429 / 3e-151 Protein phosphatase 2C family protein (.1) AT5G10740 421 / 3e-149 Protein phosphatase 2C family protein (.1) AT1G43900 330 / 2e-113 Protein phosphatase 2C family protein (.1) AT5G53140 319 / 4e-108 Protein phosphatase 2C family protein (.1) AT1G78200 216 / 8e-70 Protein phosphatase 2C family protein (.1.2) AT2G20630 209 / 5e-67 PIA1 PP2C induced by AVRRPM1 (.1.2) AT1G34750 206 / 7e-66 Protein phosphatase 2C family protein (.1) AT1G22280 203 / 1e-64 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3) AT4G28400 203 / 1e-64 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026239 [exp] 487 / 5e-177 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 457 / 1e-164 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10020104 [exp] 457 / 4e-164 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10014926 [exp] 332 / 6e-115 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10019012 [exp] 327 / 8e-112 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10042775 [exp] 313 / 1e-104 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10029745 [exp] 313 / 1e-103 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10039341 [exp] 295 / 1e-98 AT5G53140 444 / 1e-154 Protein phosphatase 2C family protein (.1) Lus10018618 [exp] 214 / 6e-69 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267600 [exp] 466 / 6e-168 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 462 / 1e-166 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.002G074500 [exp] 347 / 5e-121 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.005G186001 [exp] 345 / 1e-120 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.015G019200 [exp] 331 / 7e-114 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.012G002100 [exp] 328 / 2e-112 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.006G081400 [exp] 217 / 9e-70 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 214 / 6e-69 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.018G150800 [exp] 209 / 1e-66 AT4G28400 340 / 1e-117 Protein phosphatase 2C family protein (.1) Potri.005G164600 [exp] 208 / 2e-66 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10042430 pacid=23154004 polypeptide=Lus10042430 locus=Lus10042430.g ID=Lus10042430.BGIv1.0 annot-version=v1.0 ATGGAAGACTTTTACGAGACAAGAATTGATGGTGTTGATGGGGAAATAGTTGGTCTTTTTGGAGTTTTTGATGGTCATGGAGGTGCACGAGCTGCTGAAT ACGTGAAGCAAAATCTTTTCAGTAATTTGATCAGCCACCCAACGTTCATTTCAGATACTAAATCAGCTATAGCTGATGCATACAATCACACAGACTCAGA GTTCCTTAAATCAGAAAATACCCAGAACAGGGATGCTGGTTCAACTGCTTCTACAGCTATTCTCGTTGGTGATCGTCTGCTTGTTGCCAATGTTGGAGAT TCTAGGGCTGTCATATGCCGGGGTGGAAATGCTATTGCTGTTTCTCGAGATCATAAGCCAGACCAAACTGATGAACGACAGAGGATTGAAGATGCTGGAG GATTCGTAATGTGGGCAGGCACCTGGAGAGTTGGCGGTGTTCTTGCCGTCTCTCGGGCATTTGGGGATCGGATGCTGAAACAGTACGTAGTTGCTGACCC AGAAATTCAGGAAGAGAAAATTGACAGCTCTCTGGAGTTTCTCATCCTTGCCAGTGATGGATTATGGGATGTTGTAACAAATGAGGAAGCAGTTGAGATG ACTAAACCTATCCAGGAACCAGAGCAAGCTGCAAAGAGGCTGCTTCAGGAGGCATACCAGAGAGGCAGTGCTGATAACATTACATGTGTCGTAGTTCGCT TCTTGGCCTTGTCTCAGGGCGGAGGAACCTCTCAAGGAAGCAACAACTCCCACGGTGGTGGTGGTGGTGGCAACTCACACACGTGA
AA sequence Show only first row Show all	>Lus10042430 pacid=23154004 polypeptide=Lus10042430 locus=Lus10042430.g ID=Lus10042430.BGIv1.0 annot-version=v1.0 MEDFYETRIDGVDGEIVGLFGVFDGHGGARAAEYVKQNLFSNLISHPTFISDTKSAIADAYNHTDSEFLKSENTQNRDAGSTASTAILVGDRLLVANVGD SRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRMLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVTNEEAVEM TKPIQEPEQAAKRLLQEAYQRGSADNITCVVVRFLALSQGGGTSQGSNNSHGGGGGGNSHT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10042430 [exp]	0	1
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017282 [exp]	1.4	0.9373
AT1G56423			unknown protein		Lus10031415 [exp]	2.0	0.9276
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10005610 [exp]	2.0	0.9363
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10043112 [exp]	2.4	0.9318
AT5G28050			Cytidine/deoxycytidylate deami...		Lus10015942 [exp]	5.5	0.9031
AT2G02970			GDA1/CD39 nucleoside phosphata...		Lus10012825 [exp]	7.1	0.9069
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10036280 [exp]	10.1	0.9010
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10007757 [exp]	11.0	0.9129
AT4G27880			Protein with RING/U-box and TR...		Lus10022405 [exp]	13.0	0.9033
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Lus10014641 [exp]	13.6	0.8566

Compare expression of checked genes

Lus10042430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.