Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24930 171 / 2e-51 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT5G57660 130 / 2e-36 CO COL5, ATCOL5 CONSTANS-like 5 (.1) AT2G24790 127 / 8e-36 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT3G02380 113 / 6e-30 CO ATCOL2, COL2 CONSTANS-like 2 (.1) AT5G15850 108 / 6e-28 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT5G15840 103 / 2e-26 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) AT1G73870 71 / 3e-14 CO COL7 B-box type zinc finger protein with CCT domain (.1) AT5G14370 67 / 5e-13 CCT motif family protein (.1) AT1G49130 66 / 9e-13 CO COL8 B-box type zinc finger protein with CCT domain (.1.2) AT1G68520 64 / 5e-12 CO COL6 B-box type zinc finger protein with CCT domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026238 [exp] 352 / 3e-124 AT5G24930 163 / 9e-48 CONSTANS-like 4 (.1) Lus10026909 [exp] 227 / 1e-73 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1) Lus10020105 [exp] 212 / 7e-68 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1) Lus10031016 [exp] 131 / 7e-40 ND 47 / 1e-07 Lus10037636 [exp] 97 / 8e-25 AT5G57660 119 / 5e-32 CONSTANS-like 5 (.1) Lus10015619 [exp] 100 / 1e-24 AT5G57660 210 / 3e-64 CONSTANS-like 5 (.1) Lus10005106 [exp] 87 / 5e-20 AT3G02380 194 / 6e-59 CONSTANS-like 2 (.1) Lus10024655 [exp] 62 / 2e-11 AT1G63820 180 / 2e-54 CCT motif family protein (.1) Lus10032288 [exp] 62 / 3e-11 AT1G63820 160 / 5e-47 CCT motif family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G013800 [exp] 205 / 2e-65 AT5G24930 348 / 2e-118 CONSTANS-like 4 (.1) Potri.006G267700 [exp] 205 / 2e-65 AT5G24930 361 / 1e-123 CONSTANS-like 4 (.1) Potri.018G096084 [exp] 142 / 6e-41 AT5G57660 283 / 5e-93 CONSTANS-like 5 (.1) Potri.006G173600 [exp] 129 / 9e-36 AT5G57660 315 / 1e-105 CONSTANS-like 5 (.1) Potri.017G107500 [exp] 121 / 1e-32 AT3G02380 330 / 7e-112 CONSTANS-like 2 (.1) Potri.004G108320 [exp] 117 / 3e-31 AT3G02380 302 / 8e-101 CONSTANS-like 2 (.1) Potri.015G054600 [exp] 67 / 7e-13 AT1G25440 272 / 2e-87 B-box type zinc finger protein with CCT domain (.1) Potri.001G339200 [exp] 65 / 2e-12 AT5G14370 174 / 5e-52 CCT motif family protein (.1) Potri.010G125100 [exp] 64 / 6e-12 AT1G25440 311 / 3e-102 B-box type zinc finger protein with CCT domain (.1) Potri.008G120400 [exp] 64 / 6e-12 AT1G25440 314 / 2e-103 B-box type zinc finger protein with CCT domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10042431 pacid=23153509 polypeptide=Lus10042431 locus=Lus10042431.g ID=Lus10042431.BGIv1.0 annot-version=v1.0 ATGGATCTGAACACCGGCCAGTTCTTGTTCCACGAGATGGATCCGAGCTATCTGGATCTGGAGTATGTGGATCCGAAGATGGAAGCGCATGAGCAGAACA GTTCGGGAGCCGACGGAGTAGTTCCGGAGCAAATCAACGAGGCCACCGCCGGCGGCAATCATCATCAAGCTCCGATGCTCATGAACGACGACCACTGCTT CGATCTCGATTTCTCCGCCACCGTTGACGAATCCAAGGGCTTCCCCTACGGCTATCAGTGCTTGAGCCACAGCTTATCATCTTCGTCAATGGACGTGGGA GTGGTTCCAGAAGGCAGCGTTATGACGGACATATCGAATTCGTACAGCAGAGGAGTAGGAGGGATGGCGATTGGGTGTGAATCGGCGTCGGCGGCGGCGG CGGGGAGCCAGACGACGGTGCCGCTATCGGCGGCGGAGAGGGAGGCGAGAGTGCTCCGTTACAGGGAGAAGAGGAAGAATCGGAAGTTCGAGAAGACGAT AAGGTACGCGTCGAGGAAAGCTTATGCGGAGACGAGGCCAAGAATCAAAGGGAGGTTCGCCAAGCGTACGGATGCTGACGTGGAAGCGGATCGGAGCATG TACGGATTCGGGGTAGTTCCGTCGTTCTAA
AA sequence Show only first row Show all	>Lus10042431 pacid=23153509 polypeptide=Lus10042431 locus=Lus10042431.g ID=Lus10042431.BGIv1.0 annot-version=v1.0 MDLNTGQFLFHEMDPSYLDLEYVDPKMEAHEQNSSGADGVVPEQINEATAGGNHHQAPMLMNDDHCFDLDFSATVDESKGFPYGYQCLSHSLSSSSMDVG VVPEGSVMTDISNSYSRGVGGMAIGCESASAAAAGSQTTVPLSAAEREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDADVEADRSM YGFGVVPSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10042431 [exp]	0	1
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10035089 [exp]	1.0	0.9722
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10000268 [exp]	2.0	0.9426
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10022903 [exp]	3.0	0.9099
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10001866 [exp]	3.6	0.9072
AT3G01570			Oleosin family protein (.1)		Lus10014559 [exp]	3.7	0.9037
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Lus10025579 [exp]	4.9	0.9324
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10011777 [exp]	4.9	0.9314
AT3G01060			unknown protein		Lus10005219 [exp]	6.0	0.9237
AT3G55760			unknown protein		Lus10021897 [exp]	6.3	0.9096
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Lus10026795 [exp]	6.7	0.9272

Compare expression of checked genes

Lus10042431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.