Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47950 101 / 4e-24 HXXXD-type acyl-transferase family protein (.1) AT4G15390 92 / 1e-20 HXXXD-type acyl-transferase family protein (.1) AT3G26040 89 / 7e-20 HXXXD-type acyl-transferase family protein (.1) AT3G30280 87 / 4e-19 HXXXD-type acyl-transferase family protein (.1) AT1G24430 77 / 7e-16 HXXXD-type acyl-transferase family protein (.1) AT5G47980 75 / 5e-15 HXXXD-type acyl-transferase family protein (.1) AT1G24420 75 / 7e-15 HXXXD-type acyl-transferase family protein (.1) AT1G65450 58 / 2e-09 HXXXD-type acyl-transferase family protein (.1.2.3) AT5G57840 57 / 4e-09 HXXXD-type acyl-transferase family protein (.1) AT4G15400 55 / 3e-08 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026237 [exp] 380 / 3e-130 AT3G26040 214 / 6e-64 HXXXD-type acyl-transferase family protein (.1) Lus10026236 [exp] 322 / 3e-106 AT3G26040 210 / 1e-61 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 285 / 1e-93 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10036078 [exp] 221 / 2e-68 AT3G26040 221 / 8e-67 HXXXD-type acyl-transferase family protein (.1) Lus10014695 [exp] 219 / 8e-68 AT3G26040 221 / 2e-66 HXXXD-type acyl-transferase family protein (.1) Lus10040354 [exp] 203 / 1e-61 AT3G26040 224 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10040351 [exp] 109 / 2e-28 AT1G24430 79 / 4e-17 HXXXD-type acyl-transferase family protein (.1) Lus10002893 [exp] 99 / 5e-23 AT5G47950 195 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 95 / 9e-22 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010700 [exp] 121 / 3e-31 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 114 / 7e-29 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.010G056300 [exp] 107 / 4e-26 AT3G26040 347 / 4e-116 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 105 / 1e-25 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 104 / 3e-25 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 102 / 1e-24 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 102 / 2e-24 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 102 / 2e-24 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 102 / 2e-24 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 97 / 2e-22 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10042432 pacid=23153566 polypeptide=Lus10042432 locus=Lus10042432.g ID=Lus10042432.BGIv1.0 annot-version=v1.0 ATGGTTCACTTTCTTCGTAGCTCTCCGCCAGATAATCAGATGCTGGGTCGTTCGGTCCCCCCACGACAACAACTGTCGACCGTGGACATGCCTCTCGCGT ATTTCGAAACCACAGTGTTCCGATGTGGCGGGATGGCGGTGGGAGTTTCCTTAAACCATCTCATCGCTGATGGTCAATGTTTCACCATGTTAATCAATCA TTGGGCTGCCGTTGCCAGGGGATCATCAGATTCCACAAACATGCATCATCAGGTGTACGCTCACAACATGGCCGCTGAGTTGTTTCCAGTAAACGAGGCA GTTTTAAACAGTAAGCCGTTGGCTTGGCGGAAACAGGTGGATTCGTCAAATACGACGAATGACGTTGAAATGCCGGTTGCCATTTTGAAGAGATTCGTTT TCAAACCGGAGGAAATATCAGCCTTGCAATCCAGAGTCAAAAGCTCTCAAGTACCCAACCCAAGTCGAACTATGTCCATCTTTGCGCTAATCTGGAAGAC TGCAATGAAAGCTTACACATCATCATCATCATCAGGCCAAACTAAAACGATGTCGTCTGCTGTACTTTCACCCGTCAACCTACGACCCAGATTGAAGACG CTATTGCCCGACTACTCTATCGGAAATCTGTTGTGGGTCACAGAATCACGTCACGAATTTGAGACGTCGCCGTCCCATGATAATGATGAACTAATAATTA AACGGCTGACGTACCAGCTGAAGAGATCCATAGACAAAGTGGATACCGAATTTGTGGAAATTTTGAAAGGCGAGAAAGGGCACAGTGAAGTTCGCAAGTG GCTGGACGCCAGGGGGCTCGGCAACAAAGATTATGTATTTTCAAGTGTGTTAAGGTCTGGGTTGAATAAAGTTGACTTCGGAACGGGGGAAGCCCGTTTG GGTTAG
AA sequence Show only first row Show all	>Lus10042432 pacid=23153566 polypeptide=Lus10042432 locus=Lus10042432.g ID=Lus10042432.BGIv1.0 annot-version=v1.0 MVHFLRSSPPDNQMLGRSVPPRQQLSTVDMPLAYFETTVFRCGGMAVGVSLNHLIADGQCFTMLINHWAAVARGSSDSTNMHHQVYAHNMAAELFPVNEA VLNSKPLAWRKQVDSSNTTNDVEMPVAILKRFVFKPEEISALQSRVKSSQVPNPSRTMSIFALIWKTAMKAYTSSSSSGQTKTMSSAVLSPVNLRPRLKT LLPDYSIGNLLWVTESRHEFETSPSHDNDELIIKRLTYQLKRSIDKVDTEFVEILKGEKGHSEVRKWLDARGLGNKDYVFSSVLRSGLNKVDFGTGEARL G

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10042432 [exp]	0	1
AT4G02920			unknown protein		Lus10042685 [exp]	5.7	0.8738
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10014039 [exp]	6.2	0.8524
AT2G21340			MATE efflux family protein (.1...		Lus10041955 [exp]	9.6	0.8576
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10016195 [exp]	16.0	0.8461
AT2G21340			MATE efflux family protein (.1...		Lus10017964 [exp]	16.2	0.8416
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10033572 [exp]	16.4	0.8502
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020484 [exp]	19.1	0.8442
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10022257 [exp]	19.7	0.8374
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10027400 [exp]	23.6	0.8283
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10027809 [exp]	25.0	0.8374

Compare expression of checked genes

Lus10042432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.