Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 249 / 4e-78 HXXXD-type acyl-transferase family protein (.1) AT1G24420 226 / 3e-69 HXXXD-type acyl-transferase family protein (.1) AT4G15390 221 / 3e-67 HXXXD-type acyl-transferase family protein (.1) AT3G30280 221 / 4e-67 HXXXD-type acyl-transferase family protein (.1) AT5G47950 215 / 6e-65 HXXXD-type acyl-transferase family protein (.1) AT1G24430 200 / 2e-59 HXXXD-type acyl-transferase family protein (.1) AT5G47980 191 / 6e-56 HXXXD-type acyl-transferase family protein (.1) AT4G15400 178 / 6e-51 HXXXD-type acyl-transferase family protein (.1) AT5G23970 161 / 1e-44 HXXXD-type acyl-transferase family protein (.1) AT5G48930 108 / 1e-25 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026237 [exp] 520 / 0 AT3G26040 214 / 6e-64 HXXXD-type acyl-transferase family protein (.1) Lus10026236 [exp] 466 / 3e-160 AT3G26040 210 / 1e-61 HXXXD-type acyl-transferase family protein (.1) Lus10014695 [exp] 391 / 2e-132 AT3G26040 221 / 2e-66 HXXXD-type acyl-transferase family protein (.1) Lus10036078 [exp] 379 / 8e-128 AT3G26040 221 / 8e-67 HXXXD-type acyl-transferase family protein (.1) Lus10040354 [exp] 362 / 9e-121 AT3G26040 224 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10042432 [exp] 290 / 2e-95 AT5G47950 103 / 4e-25 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 247 / 4e-77 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 244 / 1e-75 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 230 / 1e-68 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010700 [exp] 264 / 1e-83 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 249 / 4e-78 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 247 / 7e-77 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 247 / 7e-77 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 246 / 9e-77 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 246 / 2e-76 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 232 / 3e-71 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 232 / 3e-71 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 230 / 2e-70 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 229 / 1e-69 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10042433 pacid=23153628 polypeptide=Lus10042433 locus=Lus10042433.g ID=Lus10042433.BGIv1.0 annot-version=v1.0 ATGGCTTCGCAGCAGTCGGCCAAAGATGTCTTTGCAGTGAAGGTAACATCAAAATCATTCATCAAACCATCCTCCCCAACCCCTCCCAACTTTCAAAACT TCAAACTATCCCTTCTCGATCAGCTGTACCCTTCACCGCTATACCCAACTTTCGTCTTGTTTTATCATCCTCCACCTCATTTGACAAATACTGCTTCAAA TCTCCTTCGGAACTCACTCTCCGAAACCCTCTCCCATTTCTACCCACTTGCCGGCAGGATCAAAGGCTCAATCATCGATTGCAACGACCAAGGTGCTGAG TATCTGGAAGCGGAGGCAAACCAAGAAATGATTCACTTCCTTGGTAGCTCCCCTGCCCCAAGTACACATCTGCTTCGCCTTTTCGCTCCCCCACGCCCCA AATTTGCCTCCGACGACATGCCCCTTGCTTGCCTGCAAATCACTACTTTTCCTTGTGGGGGGATCGCACTAGGAATTTGCTTGAATCATACGATAGCAGA TGCTCACACTTTGAGTATGTTTCTCAACCATTGGGCCGCTTTTTTCAGGGGAGATTCCTTAACCAATTTTTGCGCTCATGACGAGGCCGCTTCACTGTTC CCAACCAACGACGCCGTTTTGAACAGCAAGTCCTTGCCTTGGAAAATATCCATTGATGATTTGTCACAGATGGTAGACCTTCCAAATACTGTTTTACAGA GATTTGTTTTCAAAGCTAGTGAAATATCGGAATTGAAATGCAAAGTCAAGAGCAATGAAGTGCCCCATCCAAGCCGGACTGTGGCCATATTTGCTCTTAT ATGGAAGATTGCTACCAAAGCATCAATATTCCCGACCCGGAGGTCTTCTGCTGCACTTACTTTAGTCAATCTCCGACCCAGGTTCAAGATCCCACTACCG GACTACTCTATTGGTAACATTTGGTGGACCGCAGTCTCGCATTATGAAACAACAAAGACCGAAAATGATGATGAACTGCAGAGGGTGGCGTTTCAATTGA AGAAATCTGTAGATGAAGTGGATGCAGAGTTTATTGAGACTTTGAAAGGTGAAATGGGGCAAGAGGAGATGAAAAAGTTTGTGCAAGGGAGGGGAACTGG AAAAGATTACATCTTTTCAAGCATAGTGAAGACGGGGTTGAACCAAGTTGATTTCGGATGGGGGAAGCCGATTTGGGTTAACTTTCTAGGCCAAACTGAC ATTTTGGTTCCTTATGGTGCTTGCCTCATGGAAGCCACAGATGTTAATGCGGGAGTTGAAGCATGGGTGACTTTGCCTAAGGAACAGATGGACATCTTTG AACAAGATCCTGAACTTCTGCAATATGCTACTGTTAATCCAAAAGTCGTGTAA
AA sequence Show only first row Show all	>Lus10042433 pacid=23153628 polypeptide=Lus10042433 locus=Lus10042433.g ID=Lus10042433.BGIv1.0 annot-version=v1.0 MASQQSAKDVFAVKVTSKSFIKPSSPTPPNFQNFKLSLLDQLYPSPLYPTFVLFYHPPPHLTNTASNLLRNSLSETLSHFYPLAGRIKGSIIDCNDQGAE YLEAEANQEMIHFLGSSPAPSTHLLRLFAPPRPKFASDDMPLACLQITTFPCGGIALGICLNHTIADAHTLSMFLNHWAAFFRGDSLTNFCAHDEAASLF PTNDAVLNSKSLPWKISIDDLSQMVDLPNTVLQRFVFKASEISELKCKVKSNEVPHPSRTVAIFALIWKIATKASIFPTRRSSAALTLVNLRPRFKIPLP DYSIGNIWWTAVSHYETTKTENDDELQRVAFQLKKSVDEVDAEFIETLKGEMGQEEMKKFVQGRGTGKDYIFSSIVKTGLNQVDFGWGKPIWVNFLGQTD ILVPYGACLMEATDVNAGVEAWVTLPKEQMDIFEQDPELLQYATVNPKVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042433 [exp]	0	1
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	3.0	0.9083
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Lus10011868 [exp]	7.7	0.8977
AT5G49690			UDP-Glycosyltransferase superf...		Lus10008955 [exp]	8.1	0.8611
AT2G46640			unknown protein		Lus10005993 [exp]	8.2	0.8638
AT3G14880			unknown protein		Lus10039193 [exp]	9.2	0.8292
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018161 [exp]	9.8	0.8870
AT3G55080			SET domain-containing protein ...		Lus10023469 [exp]	10.5	0.8130
AT5G18520			Lung seven transmembrane recep...		Lus10000821 [exp]	10.7	0.8349
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10003992 [exp]	11.0	0.8566
AT2G24580			FAD-dependent oxidoreductase f...		Lus10026231 [exp]	12.0	0.8311

Compare expression of checked genes

Lus10042433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.