Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24610 891 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT4G30360 852 / 0 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT5G14870 794 / 0 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT3G48010 769 / 0 ATCNGC16 cyclic nucleotide-gated channel 16 (.1) AT2G28260 704 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT1G15990 673 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT4G30560 669 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT5G57940 664 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT2G23980 657 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT1G19780 654 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026233 [exp] 1403 / 0 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10020122 [exp] 972 / 0 AT2G24610 879 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026924 [exp] 961 / 0 AT2G24610 868 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10019983 [exp] 892 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10015510 [exp] 890 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10023203 [exp] 873 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10039415 [exp] 773 / 0 AT5G14870 980 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10039486 [exp] 773 / 0 AT5G14870 985 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10002363 [exp] 767 / 0 AT3G48010 919 / 0.0 cyclic nucleotide-gated channel 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097600 [exp] 901 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.018G009200 [exp] 886 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.017G067000 [exp] 781 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.013G108200 [exp] 760 / 0 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.009G010700 [exp] 716 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G106100 [exp] 677 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.015G019100 [exp] 652 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.012G002200 [exp] 643 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.002G170000 [exp] 641 / 0 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.014G097900 [exp] 641 / 0 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10042434 pacid=23153708 polypeptide=Lus10042434 locus=Lus10042434.g ID=Lus10042434.BGIv1.0 annot-version=v1.0 ATGATTGCTCAACTGATCAACTGTGATGGGTTCTTCGTTTTTCTTTACAGTTTCTTAAACCCCCATGGAGGGGAAAAGGCGTCGTCTTTGACATCTTGGC CATGGTTGAAAACTGAAAAGAGTGGCCTTGACGGAAGGGATTCCTTAACTAGACATAAAAATGTCTCCAAATTGGGCAAGTTCAGATTGTTCCTGGAGAT TAACCAGCATGTGTCTTGGAAGAATGGAATTGTCGATCCGGGAAGTGACGTGTTCCTCCAGTGGAACAGGGTTTTCCTCTTCTCTTGCTTGGTGGCACTT TTTATCGACCCGTTGTTCTTCTACGTCCCCACCATCGTCCAGTCGGAAGGTTCGACTTGTATGGCGATTGACTTGAACCTGGGAATCACTGTCACTTGTT TGAGAACTATTGCGGATGCTTTCTATGCAATGCACATAGTTTTCAAATTCAGGACAGCTTATGTGTCTCCTAGTTCAAGAGTTTTCGGCAAGGGGGAACT CGTTATGGATCGTAACTTGATCGCCGTGAGATACTTGAGATCTGATTTCTTCATTGATTTCATTGCTGCATTGCCCCTTCCTCAGATTATGATATGGCTT GTGATTCCAGTGATAAAAACTGTGCAGTCTGATTACACCAACAACGCCCTTGTCCTGGTGGTTCTGCTGCAGTATATTCCAAGACTATATCTGATTTTCC CACTAAGTGCAGAGATAAGCAACGCCGCTGGAGTCATGACCAAAACTGCTTGGGCTGGTGCTGCATACAACCTTGTCTTATACATGTTGGCCAGCCATGT GGTGGGTTCTGCTTGGTATTTGTGTTCAATTGAGCGGTATGCAACGTGCTGGAAATCCGTGTGCGAGCAGGATTTGGGCAACCACCAAACACACTGCAAA TCTTCTTACTTGATTTGCAACAATCTTGAGAAGCCTGACCGGAAGGTGTGGGCAGAGGTTACTAGGGTGTTCAGCAAGTGTGATCCAAACAACGATTCTG ACCCGACTGTAGTTGATTACGGGATGTTCGCTGATGCTTTGTCGAAGCAGGTTGCTTCTGCAACCTTCATTGAGAAGTACTTTTATTGCCTATGGTGGGG CTTGCAGCACTTGAGTTCCTATTGCCAGAGTGCAACCACAACCACGTTTGTTGGAGAAACATTGTTTGCCATACTAATAGCAATCATGGGTCTTGTGCTC TTTGCACATTTGATTGGAAACATGCAGACATACTTGCAATCCATAACTGCAAGACTTGAAGAATGGAGGCTGAAGAGAAGGGATACTGAAGAGTGGATGG GACATCGCCAACTCTCTGGAAACCTTCGAGACCGTGTCAGGCGATATGTCCAGTACAAGTGGCTCGCGACTCGTGGTGTTGACGAGGAAGGAATCTTGCG CCAACTGCCTGCTGATCTTCGTCGAGACATTCAGCGCCACCTCTGTTTAGACCTTGTTCGACGTGTTCCATTCTTCTCACAAATGGATGACCTACTACTA GATGCCATATGCGAACGGTTGACATCCATGTTGATCACTCAAGGTACAAACATTGTTCGAGAAGGCGACCCGGTAAGCGAGATGCTGTTCATAATCAGAG GGAGACTAGAGAGCTCCACAACAGACGGTGGGAGGTCAGGTTTCTTCAACTCAATCCCACTAAGGCCAGGAGATTTCTGTGGCGAAGAGCTGCTCGCTTG GGCATTGGTTCCGAACTCGAATTCGAATCTGCCATCCTCGACTAGAACAGTGAGAGCATTGGAAGAAGTGGAAGCATTTTCATTGCGTGCAGAAGATCTT AAGTTTGTTGCCAACCAGTTCAGACGCCTCCACAGTAAGAAGCTGCAGCACACGTTCCGGTTATATTCGCACCATTGGAGGACATGGGCCGCGTGCTTCA TTCAATCTACGTGGCGTAGATTCAAGAGGAGGAGGATGGCCAAAACGTTAAGCATGGCAGAGTCGTTGATGTCCTGTTTTACTCTGGATTATGATGAAAC AAGAGAAGATCAAGAGACTAGTACTGCTGCTCCATCTAGTAGCGCATCAGAACCAACGCAAAAGAACCTGATGGTTAAGAGGTTTGCTAAGCGATTTGTT GCGAATGCCAGAAGAGGAACTCTTAAGATGAAGGATGTTGAAATGCCTAAGTTGATCAAGCCTGATGAGCCAGATTTCTCCATTGATGCAAGTGACGATG AGAAATGA
AA sequence Show only first row Show all	>Lus10042434 pacid=23153708 polypeptide=Lus10042434 locus=Lus10042434.g ID=Lus10042434.BGIv1.0 annot-version=v1.0 MIAQLINCDGFFVFLYSFLNPHGGEKASSLTSWPWLKTEKSGLDGRDSLTRHKNVSKLGKFRLFLEINQHVSWKNGIVDPGSDVFLQWNRVFLFSCLVAL FIDPLFFYVPTIVQSEGSTCMAIDLNLGITVTCLRTIADAFYAMHIVFKFRTAYVSPSSRVFGKGELVMDRNLIAVRYLRSDFFIDFIAALPLPQIMIWL VIPVIKTVQSDYTNNALVLVVLLQYIPRLYLIFPLSAEISNAAGVMTKTAWAGAAYNLVLYMLASHVVGSAWYLCSIERYATCWKSVCEQDLGNHQTHCK SSYLICNNLEKPDRKVWAEVTRVFSKCDPNNDSDPTVVDYGMFADALSKQVASATFIEKYFYCLWWGLQHLSSYCQSATTTTFVGETLFAILIAIMGLVL FAHLIGNMQTYLQSITARLEEWRLKRRDTEEWMGHRQLSGNLRDRVRRYVQYKWLATRGVDEEGILRQLPADLRRDIQRHLCLDLVRRVPFFSQMDDLLL DAICERLTSMLITQGTNIVREGDPVSEMLFIIRGRLESSTTDGGRSGFFNSIPLRPGDFCGEELLAWALVPNSNSNLPSSTRTVRALEEVEAFSLRAEDL KFVANQFRRLHSKKLQHTFRLYSHHWRTWAACFIQSTWRRFKRRRMAKTLSMAESLMSCFTLDYDETREDQETSTAAPSSSASEPTQKNLMVKRFAKRFV ANARRGTLKMKDVEMPKLIKPDEPDFSIDASDDEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10042434 [exp]	0	1
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	13.8	0.6236
AT5G04970			Plant invertase/pectin methyle...		Lus10028882 [exp]	17.5	0.6222
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10013884 [exp]	21.5	0.6133
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10021039 [exp]	23.5	0.6122
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006665 [exp]	27.8	0.6198
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10027432 [exp]	27.9	0.5797
AT5G49180			Plant invertase/pectin methyle...		Lus10023775 [exp]	35.7	0.5846
AT3G10720			Plant invertase/pectin methyle...		Lus10008937 [exp]	37.0	0.6110
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Lus10027553 [exp]	38.1	0.6038
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	44.2	0.6039

Compare expression of checked genes

Lus10042434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.