Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30380 97 / 2e-26 EXLB2 Barwin-related endoglucanase (.1) AT2G18660 81 / 4e-20 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1) AT4G01630 43 / 2e-05 ATEXP17, ATHEXPALPHA1.13, ATEXPA17 EXPANSIN 17, expansin A17 (.1) AT1G62980 43 / 3e-05 ATHEXPALPHA1.25, ATEXP18, ATEXPA18 EXPANSIN 18, expansin A18 (.1) AT3G29030 40 / 0.0002 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) AT2G20750 39 / 0.0005 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026232 [exp] 212 / 2e-71 AT4G30380 90 / 2e-23 Barwin-related endoglucanase (.1) Lus10019978 [exp] 90 / 1e-23 AT4G30380 162 / 8e-53 Barwin-related endoglucanase (.1) Lus10020130 [exp] 84 / 1e-20 AT2G18660 70 / 2e-15 plant natriuretic peptide A (.1) Lus10026931 [exp] 83 / 7e-20 AT4G30380 64 / 9e-13 Barwin-related endoglucanase (.1) Lus10030078 [exp] 80 / 2e-19 AT2G18660 84 / 3e-21 plant natriuretic peptide A (.1) Lus10026930 [exp] 80 / 6e-19 AT2G18660 69 / 6e-15 plant natriuretic peptide A (.1) Lus10013118 [exp] 74 / 3e-17 AT4G30380 67 / 5e-15 Barwin-related endoglucanase (.1) Lus10031759 [exp] 72 / 2e-16 AT2G18660 107 / 1e-30 plant natriuretic peptide A (.1) Lus10019444 [exp] 68 / 5e-15 AT2G18660 68 / 3e-15 plant natriuretic peptide A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218300 [exp] 130 / 2e-39 AT4G30380 86 / 2e-22 Barwin-related endoglucanase (.1) Potri.018G098200 [exp] 115 / 1e-33 AT4G30380 122 / 5e-37 Barwin-related endoglucanase (.1) Potri.018G101600 [exp] 103 / 5e-29 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1) Potri.006G179300 [exp] 100 / 6e-28 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1) Potri.006G176300 [exp] 94 / 4e-25 AT4G30380 165 / 6e-54 Barwin-related endoglucanase (.1) Potri.006G252200 [exp] 80 / 8e-20 AT2G18660 91 / 2e-24 plant natriuretic peptide A (.1) Potri.018G029100 [exp] 79 / 1e-19 AT2G18660 94 / 2e-25 plant natriuretic peptide A (.1) Potri.018G031901 [exp] 75 / 1e-17 AT4G30380 57 / 3e-11 Barwin-related endoglucanase (.1) Potri.006G249500 [exp] 72 / 1e-16 AT4G30380 61 / 1e-12 Barwin-related endoglucanase (.1) Potri.006G155000 [exp] 68 / 6e-15 AT2G18660 59 / 1e-11 plant natriuretic peptide A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10042435 pacid=23153789 polypeptide=Lus10042435 locus=Lus10042435.g ID=Lus10042435.BGIv1.0 annot-version=v1.0 ATGGCACACCAATGGCAACAAGTGCAGGCGCCGACCGTTTTAGTGGTGGTCGTCACCTTTGCTGCTTTCTTCATCTTCTTAACCGGGCCGTGCTCCGGAC ACCAAGGCACTGCAAGTTTCTACACACCTCCTTATGAACCATCGGCTTGCTACGGGTACGACGCGCAGGACGGGATGACGGCGGCAGCAAGTGAAACGCA CCTTTGGAAAGGCGGACGTGCTTGCGGGAAGCGTTACACAGTGAAGTGCTTAAGCGGGACCAACCAAGGAGTTGCGGTGCCTTGCAAGAAAGGCAAGAGT GTTACGGTGAAGATCATCGACCTATGTCCTGCCGTCGGCTGCAAGGCTACCATTGACTTGTCCCAGAAAGCCTTTGCCCACATCGCTGACCCTGACGAGG GAATCATCAACATCTCCTACCAAGAGTACGTCTCCAGCTCTGATCACTACTACTACAAGAAAATGTAG
AA sequence Show only first row Show all	>Lus10042435 pacid=23153789 polypeptide=Lus10042435 locus=Lus10042435.g ID=Lus10042435.BGIv1.0 annot-version=v1.0 MAHQWQQVQAPTVLVVVVTFAAFFIFLTGPCSGHQGTASFYTPPYEPSACYGYDAQDGMTAAASETHLWKGGRACGKRYTVKCLSGTNQGVAVPCKKGKS VTVKIIDLCPAVGCKATIDLSQKAFAHIADPDEGIINISYQEYVSSSDHYYYKKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10042435 [exp]	0	1

Compare expression of checked genes

Lus10042435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.