Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24580 496 / 2e-175 FAD-dependent oxidoreductase family protein (.1) AT5G24155 40 / 0.0007 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026231 [exp] 734 / 0 AT2G24580 532 / 0.0 FAD-dependent oxidoreductase family protein (.1) Lus10020132 [exp] 506 / 6e-180 AT2G24580 501 / 6e-178 FAD-dependent oxidoreductase family protein (.1) Lus10026933 [exp] 0 / 1 AT2G24580 153 / 6e-43 FAD-dependent oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G008700 [exp] 546 / 0 AT2G24580 569 / 0.0 FAD-dependent oxidoreductase family protein (.1) Potri.006G272800 [exp] 518 / 0 AT2G24580 585 / 0.0 FAD-dependent oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01266 [flax] [poplar] DAO FAD dependent oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10042437 pacid=23153894 polypeptide=Lus10042437 locus=Lus10042437.g ID=Lus10042437.BGIv1.0 annot-version=v1.0 ATGGATCTTTCCGGAGGAAACCAATTCGACACAATAGTCGTCGGAGCCGGCATCATGGGCAGCGCCACCGCGTACCAGCTAGCCAAGAGAGGCCAGAAGG TAATTCTGCTCGAACAATTCGATTTCCTCCACCACCGCGGCTCATCTCACGGCGAGTCCCGCACTATCAGAGCCACTTACCCTGAGGACTACTATTGCGC CATGGCCGTCGAGTCTTCCCGCCTGTGGGAGGAGGCCGAGGCGGAAATCGGGTACAAGGTCTACTTCAAAGCCCCTCAATTCGACCTGGGACCTTCCGAC AACAAAAGCCTCCTTGGTATCGTCTCAAGCTGCAGGAACCGATCCGTTAGCTGCAGGGTGCTTGACCACCGCCAGGTGGAGGAGGAATTCGCCTGCCGGG TCAAGATACCGGAGAATTGGATTGGGGTTTGCACGGAGATGGGCGGGATTCTGAAACCGACGAAGGCCGTCGCGATGATGCAAACGCTCGCGTTCCGAAA CGGCGCCGTTTTGAGAGACCGCACGGAAGTGAAGGAGATCGTTAAGGACGATGTCAGAGGTGGAGTACACGTGTTGATCGGCGGTGAGAAGGAGGATGAC AAGATTTGGGGGAAGAAGTGCGTAGTGACTGCCGGAGCTTGGACGAAGAAATTAGTTGAAAGGGTTAGCGGGATCGAGCTGCCGATCCAGCCAGTTGAAA CGACGGTATGTTACTGGAAAGTGAAAGAAGGGCACGAAGGTAAATTCGCGATGGGAGGAGGGGTATTCCCGACATTTGCCAACTACGGGAGGCCGTACAT ATACGGGACGCCGTCGCTGGAGTATCCGGGTCTGGTGAAGGTAGCGGTACACGGCGGGTACCCGTGCGACCCGGACAAGAGGGCGTGGGGGCCGGTGAAA TCGGAGGAGAAATTGAAGGAGTGGATCGAGAAGAGGTTCGGAGGTGCGGTGGAGACGGAAGGCGGGCCGGTGGTGAAGCAGTCGTGTATGTATTCAATGA CTCCCGACGAAGATTATGTGATCGATTTCGTGGGAGGGGAGTTTGGGAAAGATGTAATCGTGGGAGGTGGGTTTTCGGGTCACGGGTTTAAGATGGGTCC TGTTGTGGGGAAGATTCTGGGTGATCTTGCTGTCCATGGGGAATCTAAAGGGTTTGTGGAGGAAGGGATTCCTAATGTGTTTAGGATAAGTAGATTCGAA GAGAATCCATTTGGGAATGTGAAGGATTTCCAAGTGAATGATTGTATTTCTTGA
AA sequence Show only first row Show all	>Lus10042437 pacid=23153894 polypeptide=Lus10042437 locus=Lus10042437.g ID=Lus10042437.BGIv1.0 annot-version=v1.0 MDLSGGNQFDTIVVGAGIMGSATAYQLAKRGQKVILLEQFDFLHHRGSSHGESRTIRATYPEDYYCAMAVESSRLWEEAEAEIGYKVYFKAPQFDLGPSD NKSLLGIVSSCRNRSVSCRVLDHRQVEEEFACRVKIPENWIGVCTEMGGILKPTKAVAMMQTLAFRNGAVLRDRTEVKEIVKDDVRGGVHVLIGGEKEDD KIWGKKCVVTAGAWTKKLVERVSGIELPIQPVETTVCYWKVKEGHEGKFAMGGGVFPTFANYGRPYIYGTPSLEYPGLVKVAVHGGYPCDPDKRAWGPVK SEEKLKEWIEKRFGGAVETEGGPVVKQSCMYSMTPDEDYVIDFVGGEFGKDVIVGGGFSGHGFKMGPVVGKILGDLAVHGESKGFVEEGIPNVFRISRFE ENPFGNVKDFQVNDCIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24580			FAD-dependent oxidoreductase f...		Lus10042437 [exp]	0	1
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036088 [exp]	1.7	0.9019
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10035053 [exp]	4.7	0.8499
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10031434 [exp]	4.9	0.9004
AT1G68570			Major facilitator superfamily ...		Lus10034305 [exp]	5.2	0.8759
AT1G68570			Major facilitator superfamily ...		Lus10041466 [exp]	6.6	0.8732
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10011016 [exp]	6.7	0.8682
AT5G51720			2 iron, 2 sulfur cluster bindi...		Lus10031105 [exp]	13.3	0.8628
AT3G21890	CO		B-box type zinc finger family ...		Lus10031583 [exp]	14.1	0.8667
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	14.4	0.8612
AT2G26690			Major facilitator superfamily ...		Lus10018553 [exp]	14.5	0.8588

Compare expression of checked genes

Lus10042437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.