Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31540 937 / 0 ATEXO70G1 exocyst subunit exo70 family protein G1 (.1) AT1G51640 431 / 1e-142 ATEXO70G2 exocyst subunit exo70 family protein G2 (.1) AT5G03540 194 / 4e-54 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52340 182 / 6e-49 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G52350 163 / 9e-43 ATEXO70A3 exocyst subunit exo70 family protein A3 (.1) AT1G72470 156 / 4e-40 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT5G50380 146 / 2e-36 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT5G13990 143 / 2e-35 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1) AT3G14090 141 / 3e-35 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 135 / 4e-33 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026230 [exp] 1221 / 0 AT4G31540 1045 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10037329 [exp] 566 / 0 AT4G31540 627 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10027347 [exp] 208 / 8e-58 AT4G31540 239 / 3e-69 exocyst subunit exo70 family protein G1 (.1) Lus10014917 [exp] 201 / 3e-55 AT4G31540 242 / 4e-70 exocyst subunit exo70 family protein G1 (.1) Lus10007751 [exp] 200 / 8e-55 AT4G31540 239 / 8e-69 exocyst subunit exo70 family protein G1 (.1) Lus10021283 [exp] 197 / 2e-54 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10018672 [exp] 192 / 6e-52 AT4G31540 231 / 3e-66 exocyst subunit exo70 family protein G1 (.1) Lus10035750 [exp] 177 / 1e-50 AT1G51640 177 / 4e-51 exocyst subunit exo70 family protein G2 (.1) Lus10043432 [exp] 185 / 4e-50 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G272900 [exp] 1045 / 0 AT4G31540 1010 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.018G008400 [exp] 1019 / 0 AT4G31540 971 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.010G250500 [exp] 672 / 0 AT4G31540 731 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.008G008700 [exp] 658 / 0 AT4G31540 716 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.014G015500 [exp] 206 / 5e-57 AT4G31540 250 / 4e-73 exocyst subunit exo70 family protein G1 (.1) Potri.008G017800 [exp] 201 / 8e-56 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.010G241800 [exp] 197 / 4e-54 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.016G071000 [exp] 186 / 1e-50 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.006G203900 [exp] 182 / 6e-49 AT5G52340 988 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.001G166400 [exp] 163 / 2e-42 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10042439 pacid=23153867 polypeptide=Lus10042439 locus=Lus10042439.g ID=Lus10042439.BGIv1.0 annot-version=v1.0 ATGGCGGAATGCCCGACAGGAGGCAATCTTTGCGACGAGCGTACGTTTCAGAATCTGATAGCTGCGAGAAACTCACTGAAGCTAAGCTTAGAGAAGTCCA AATCCTTGAACTTTGCCCTTGATAGAGCCGGGCCTAGGCTGCATGAGATCAGTCAACGGTTACCTTCTCTAGAAGCTTCGGTTCGCCCCATCCGTGCCGA CAAAGATGCTCTTGTTGCCGTCGGAGGTCACATTAACCGCGCCGTTGGTCCTGCTGCTGCTGTGCTTAAGGTCTTCGATGCGGTTCACGGGCTGGAGAAG TCTCTACTCTCAGATCCTCGTAATGATCTCCCTGGTTATTTGTCTGTGCTTAAGCGTCTGGAAGAGGCATTGAAGTTTCTCGGTGAAAATTGTGGACTGG CAATTCAGTGGTTGGAGGATATAGTTGAGTATTTGGAGGATAATTCCGTTGCAGACGACAAGTACCTGTCGAATTTGACGAAGTCATTGAAGAGTCTCAA GGAATTGCAGAAGGATGGTGAAAGGTCTTGTCTTGACGGTGGACTGCTCGATGCTGCATTGGATAAACTGGAAGGAGAGTTTAGGCAGTTGTTGGTTGAA CACAGTGTGCCTTTACCAATGTCATCATCTCAGTCTCTTGGAGAACAAGCAGTTATTGCACCATCTCAGTTGCCGGTTACGGTAATTCATAAGTTGCAAG CCATTCTCGGAAGGCTTATTGCGAATAACAGACTTGATGCTTGCATTTCTATATATGTCGAAGTCCGTAGTTCGAATGTCAGATCTAGCTTGCAGGCACT TGATCTTGACTATTTAGAAATTTCTATTGCTGAATTCAATGATGTGCAGAGCATAGAGCGTTATATAGCCCAATGGGGGAAACATTTAGAGTTTGCAGTC AAGCATTTGTTTGAAGCAGAGTACAAGCTCTGCAATGATGTTTTCGAGAGGATAGGATTGGATGTGTGGATGGGTTGCTTTGCGAAAATAGCTGCTCAAG CGGGAATTCTCGTGTTTCTACAATTCGGGAAGACTGTTACGGAGAGTAAGAATGATCCCAACAAGCTTATTAAGCTTTTGGACATATTTGCGTCCCTCAA CAAATTAAGACTTGATTTCAACAGGCTTTTCGGCGGTGCAGCCTGTGTTGAGATCCAAAATCTTACTAGGGATCTTATAAAGAGTGTAGTTGATGGTGCA GCTGAGATATTTTGGGAACTTCTAGTTCAGGTGGAATTACAAAGGAAGATTCCGCCTCCTGCTGATGGAGGCGTTCCGATACCGGTGAGCTTTGTTACCG AGTATTGTAATAAGCTTCTAGGGAACGATTACAAGCAGTTACTGATCCACGTTCTGCATATCCACCGAAGTTGGAAGCACGAGAAGTTCCAGGATAAGCT GCTTATCAAGGAGATGTTGAAGTTGATTAAAGCTATTGAAGTCAATTTGGAAACATGGATGAAGGCTTATGAAGATACTATCTTAGCCAACTTTTTTGCC ATGAATAACCACTATCATTTGTACAAGCATCTGAAGGGGACTAAACTCGGAGAACTTTTGGGAGATCCTTGGCTAAGAGAGCATGAGCAGTACAAGGACT ACTACGCCGCGATCTTCTTGAGAGACAGTTGGGGGAAGCTTCCCGGTCATCTGAGTCGGGAAGGGCTGATTCTCTTCTCCGGTGGGCGCGCAACTGCTCG AGATCTTGTGAAGAAAAGGCTGAAGACTTTTAACGAAGCTCTTGATGAAATGTATAACAAGCAATCACATTGGGTTGTCCCGGACAGAGATTTGAGAGAG AAGACTAGCCAGATGATTGTGCAGACTGTTGTCCCTGTCTACAGGAGCTATATGCAGAACTATGGGCCTTTAGTTGAGCAAGAGGGCAGTTCAAGTAAGT ATGCCAAGTACTCAGTGCAGTCACTGGAGCAGATGCTTGGTTCTTTATTTCAGCCTAGACCTGGGAGATATGGAAGCTTTAAAGTTAGAAGGGCCAGCGA CAAATTCGATAATAATAGCCTTCATCGCACTGCCTCTGCCATTGTGTGA
AA sequence Show only first row Show all	>Lus10042439 pacid=23153867 polypeptide=Lus10042439 locus=Lus10042439.g ID=Lus10042439.BGIv1.0 annot-version=v1.0 MAECPTGGNLCDERTFQNLIAARNSLKLSLEKSKSLNFALDRAGPRLHEISQRLPSLEASVRPIRADKDALVAVGGHINRAVGPAAAVLKVFDAVHGLEK SLLSDPRNDLPGYLSVLKRLEEALKFLGENCGLAIQWLEDIVEYLEDNSVADDKYLSNLTKSLKSLKELQKDGERSCLDGGLLDAALDKLEGEFRQLLVE HSVPLPMSSSQSLGEQAVIAPSQLPVTVIHKLQAILGRLIANNRLDACISIYVEVRSSNVRSSLQALDLDYLEISIAEFNDVQSIERYIAQWGKHLEFAV KHLFEAEYKLCNDVFERIGLDVWMGCFAKIAAQAGILVFLQFGKTVTESKNDPNKLIKLLDIFASLNKLRLDFNRLFGGAACVEIQNLTRDLIKSVVDGA AEIFWELLVQVELQRKIPPPADGGVPIPVSFVTEYCNKLLGNDYKQLLIHVLHIHRSWKHEKFQDKLLIKEMLKLIKAIEVNLETWMKAYEDTILANFFA MNNHYHLYKHLKGTKLGELLGDPWLREHEQYKDYYAAIFLRDSWGKLPGHLSREGLILFSGGRATARDLVKKRLKTFNEALDEMYNKQSHWVVPDRDLRE KTSQMIVQTVVPVYRSYMQNYGPLVEQEGSSSKYAKYSVQSLEQMLGSLFQPRPGRYGSFKVRRASDKFDNNSLHRTASAIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10042439 [exp]	0	1
AT5G62440			Protein of unknown function (D...		Lus10023594 [exp]	2.0	0.8512
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030454 [exp]	2.4	0.8482
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10036330 [exp]	4.9	0.8154
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030453 [exp]	6.0	0.8455
					Lus10026028 [exp]	7.7	0.7726
AT5G22280			unknown protein		Lus10034182 [exp]	10.1	0.7768
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10020046 [exp]	10.5	0.8338
AT4G24200			Transcription elongation facto...		Lus10017630 [exp]	10.6	0.8094
AT4G04740		CPK23, ATCPK23	calcium-dependent protein kina...		Lus10006776 [exp]	10.8	0.8413
AT5G57610			Protein kinase superfamily pro...		Lus10001314 [exp]	15.2	0.7542

Compare expression of checked genes

Lus10042439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.