Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10695 107 / 1e-32 unknown protein AT5G57123 92 / 7e-27 unknown protein AT4G29905 81 / 3e-22 unknown protein AT1G52855 49 / 2e-09 unknown protein AT3G15534 46 / 2e-08 unknown protein AT2G20835 43 / 4e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026229 [exp] 139 / 2e-45 AT5G10695 107 / 1e-32 unknown protein Lus10039793 [exp] 47 / 1e-08 AT2G20835 115 / 7e-36 unknown protein Lus10018561 [exp] 45 / 3e-08 AT2G20835 111 / 2e-34 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G007300 [exp] 117 / 1e-36 AT5G10695 102 / 6e-31 unknown protein Potri.018G140500 [exp] 93 / 6e-27 AT5G57123 99 / 1e-29 unknown protein Potri.006G073400 [exp] 90 / 1e-25 AT5G57123 97 / 8e-29 unknown protein Potri.010G251000 [exp] 60 / 7e-14 AT5G10695 39 / 1e-05 unknown protein Potri.008G007932 [exp] 51 / 1e-10 AT4G29905 54 / 1e-11 unknown protein Potri.008G007800 [exp] 51 / 2e-10 AT4G29905 54 / 1e-11 unknown protein Potri.019G104300 [exp] 47 / 8e-09 AT1G52855 116 / 2e-36 unknown protein Potri.019G104100 [exp] 47 / 8e-09 AT1G52855 116 / 2e-36 unknown protein Potri.001G405400 [exp] 46 / 2e-08 AT1G52855 85 / 9e-24 unknown protein Potri.011G124800 [exp] 45 / 3e-08 AT1G52855 119 / 1e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042440 pacid=23153644 polypeptide=Lus10042440 locus=Lus10042440.g ID=Lus10042440.BGIv1.0 annot-version=v1.0 ATGTGTTTGGTGTTCGTTTGCGACGAGGATGAAAGGGTGATATCAAGGCAGGCGGCTCCGGGAGCTTGCCCGTACTGCGGAGGGATGGTGCAAGCCATGG ACATTGAGAAACAGTGGCGTTTCTGTTTTGTGCCACTCTACTTCAACACCAAACGCAAGCACATCTGCTCTATGTGCGCCAGGCGTTTGGTGGTTCAGTA G
AA sequence Show only first row Show all	>Lus10042440 pacid=23153644 polypeptide=Lus10042440 locus=Lus10042440.g ID=Lus10042440.BGIv1.0 annot-version=v1.0 MCLVFVCDEDERVISRQAAPGACPYCGGMVQAMDIEKQWRFCFVPLYFNTKRKHICSMCARRLVVQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10695			unknown protein		Lus10042440 [exp]	0	1
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10017826 [exp]	3.7	0.8719
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10007159 [exp]	3.7	0.8084
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	8.6	0.8631
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10014307 [exp]	8.7	0.7909
					Lus10005955 [exp]	9.8	0.8311
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10009226 [exp]	10.2	0.8385
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10000932 [exp]	11.4	0.8174
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10023633 [exp]	11.5	0.8168
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10037831 [exp]	11.7	0.7496
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006700 [exp]	14.5	0.8357

Compare expression of checked genes

Lus10042440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.