Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57510 63 / 3e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026228 [exp] 246 / 4e-85 AT5G57510 62 / 6e-13 unknown protein Lus10028472 [exp] 61 / 4e-12 AT5G57510 87 / 1e-22 unknown protein Lus10033559 [exp] 53 / 2e-09 AT5G57510 84 / 1e-21 unknown protein Lus10009171 [exp] 49 / 7e-08 AT5G57510 88 / 6e-23 unknown protein Lus10017598 [exp] 49 / 1e-07 AT5G57510 80 / 6e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G273566 [exp] 92 / 2e-24 AT5G57510 75 / 4e-18 unknown protein Potri.006G273500 [exp] 92 / 2e-24 AT5G57510 75 / 4e-18 unknown protein Potri.018G094100 [exp] 78 / 4e-19 AT5G57510 107 / 5e-31 unknown protein Potri.018G006800 [exp] 74 / 1e-17 AT5G57510 61 / 1e-12 unknown protein Potri.001G406600 [exp] 39 / 0.0006 AT1G61260 192 / 1e-58 Protein of unknown function (DUF761) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042441 pacid=23153875 polypeptide=Lus10042441 locus=Lus10042441.g ID=Lus10042441.BGIv1.0 annot-version=v1.0 ATGGAGAAGAGACGAACAAACAGAAGCAGCATTAGTCCTCCTCCAGCTGGGTGGAGTTTGCTGACCCGCCTGAACAAGGCAGTGAAGAAGATCAATTTCC TTTTGAGTCTCAACATCCGACGATGGGAACTCAGTGACGCCATCAGGACAGCTGCTGTTAATCAGCGTCGAAAGAAAAAGAAGCAAAAGCAGCAGCCACA GCGCAGGTTTCTTAGCTTCAATGAGAAAGTGGGACTCCAAGGTTATGTTGAGTTATTGGAAGGTGGTGATCATAATAATAACAGGCCATCATCCACTGGA GGAGGAGTACTGCTGGATAGAATTTGCAGTTTGACCGATGAAGATGTCGACGAGCGAGCTGAGAAGTTCATAGCCAATTTCAGGCGTGATTTGTTGCTGC AGAGGCAGGTTTCCTTGAACCTGGCCTACTGCAGACTCGACAGTTTTGGATAA
AA sequence Show only first row Show all	>Lus10042441 pacid=23153875 polypeptide=Lus10042441 locus=Lus10042441.g ID=Lus10042441.BGIv1.0 annot-version=v1.0 MEKRRTNRSSISPPPAGWSLLTRLNKAVKKINFLLSLNIRRWELSDAIRTAAVNQRRKKKKQKQQPQRRFLSFNEKVGLQGYVELLEGGDHNNNRPSSTG GGVLLDRICSLTDEDVDERAEKFIANFRRDLLLQRQVSLNLAYCRLDSFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57510			unknown protein		Lus10042441 [exp]	0	1
AT1G56300			Chaperone DnaJ-domain superfam...		Lus10029862 [exp]	32.7	0.8865
AT3G57930			unknown protein		Lus10031807 [exp]	33.0	0.8709
					Lus10024873 [exp]	46.4	0.8836
AT1G47710			Serine protease inhibitor (SER...		Lus10019009 [exp]	52.9	0.8671
AT2G29070			Ubiquitin fusion degradation U...		Lus10029298 [exp]	55.0	0.8690
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10013316 [exp]	63.7	0.8339
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10015178 [exp]	66.0	0.8170
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10033664 [exp]	72.7	0.8317
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10013118 [exp]	78.7	0.8234
AT1G49310			unknown protein		Lus10040476 [exp]	85.4	0.8652

Compare expression of checked genes

Lus10042441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.