Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10660 61 / 1e-09 calmodulin-binding protein-related (.1.2) AT5G24880 58 / 1e-08 unknown protein AT5G39380 51 / 1e-06 Plant calmodulin-binding protein-related (.1) AT5G07820 49 / 5e-06 Plant calmodulin-binding protein-related (.1) AT5G61260 49 / 9e-06 Plant calmodulin-binding protein-related (.1) AT5G15430 46 / 5e-05 Plant calmodulin-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026227 [exp] 452 / 1e-154 AT5G10660 61 / 7e-10 calmodulin-binding protein-related (.1.2) Lus10034717 [exp] 48 / 5e-06 AT5G39380 86 / 1e-19 Plant calmodulin-binding protein-related (.1) Lus10030701 [exp] 48 / 2e-05 AT5G39380 132 / 6e-33 Plant calmodulin-binding protein-related (.1) Lus10021647 [exp] 47 / 4e-05 AT5G15430 95 / 5e-20 Plant calmodulin-binding protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G274600 [exp] 82 / 1e-16 AT5G24880 60 / 2e-09 unknown protein Potri.018G005500 [exp] 81 / 4e-16 AT5G10660 61 / 8e-10 calmodulin-binding protein-related (.1.2) Potri.017G090200 [exp] 54 / 2e-07 AT5G39380 134 / 4e-33 Plant calmodulin-binding protein-related (.1) Potri.015G049600 [exp] 50 / 2e-06 AT5G39380 94 / 2e-20 Plant calmodulin-binding protein-related (.1) Potri.012G067100 [exp] 50 / 3e-06 AT5G07820 96 / 4e-21 Plant calmodulin-binding protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07839 [flax] [poplar] CaM_binding Plant calmodulin-binding domain
Representative CDS sequence Show only first row Show all	>Lus10042442 pacid=23153842 polypeptide=Lus10042442 locus=Lus10042442.g ID=Lus10042442.BGIv1.0 annot-version=v1.0 ATGGCGACGAAGCCCAAGGAGAGCATCCCTAAGAAGGATGGGAAGAAGGCTACAACCACCACCACCAAAACCACCACTACAACAACCGTCTCCCACCGCC AACCACCGCCATCGACTTCTCTCCCCGCCGGCCCCGCTAATTTAAAATCTACTTCTTCATCGAGATCAGTGCCGTTGAGACCCAAGGCGGCAACATCCAA TCCCCAATCTCAACCGTCCAAATCCACAACAGGAAAGAGCATTACTAATAATGGTAAAGCTTCATCATCATCAGACCAGAAATCCGCCGCGCTCGTCAGG AGGAGATCTTTCGACAGCAGGCCTGCAGCTCCATCATCATCCCGAGTACAGAGGTCCGTCATTTCTCCGGCTCGATCCTCTACCCGATCCTCCGCCGCCG CCCCGATCCGCACATCATCTTTCAACCCTAAAACAACCGCATCATCGTCATCATCCAGGCCGGCTACTTTGGAGAGGAGCGCCACAAGCGTCAGAACCGC TGCACCTAGATCCGTCGCGGCGAGAAATAAGATCAGGAGGAGCGCCAGCCCTCCATCTCGGAGGAGAAATAACAATTCCACCAGTACTACCAGTAATGCT GCTGCAACAAAGGCTACTAATAAGAACAATATAAAAAATGTTGGGAGATCAATTACAAAATCGGGGAGTAGTAATAACAATGTCGCCGGGAAGATGGTGA ATAAATTAGCAGCTGCAGAGAAGGTAACAGCTGGGGAGACGGCAGGGAAGATGAATCATAACAATAACAATGAGGATATCAATATGAGGTTGGATAACGA GATTCAACAAGTGGGTGATCATGAGTATTTGATTAGTGAAGATGAGCAGAGCGTTAACCTTGATAATTTGGAATTGGAGTCCTCCTGCGCTAGCCCTGAG CTCCCCGGATCCCCTGCACTAAACCCTAATCCTGATGTTGATAGTGTTGAGATCAATCATGTTGATGATCGGTCCCATGAGGATAAAGAAGAAGAAGATG ATGATGGTGCTGATGAGAAGGTTATGGATTCCGTCACTAGTAGTGCTGATGATGCTAAAGAGAAGGAGGAGTCTGAAGAAGAGGAAGAGAGGACCGTACT GCAGGCAGCCATTAGTGATCCTTCAAATGGGGATAATGAGAAAGTGGAAGAAGAAAAGAATTTAGACGATGAGGAAACTGCAGTAGTTGAGGGGAAAGAT CATCAAGCAGGAGAAGATGATGATGATGATGGTGGTGAAGTGAAGGGAGGAGAGGAAGTGGAAGAGTACGAAACGCCGATGGGTGGGGCTGATCATCCTG TTGCAAGTATGGATGTTGTTGTTGACAAGGAGAAGGAGAAAGAGGAGGCTAAGGAAGAAGGAGATGACCAGGAAGAGAAAATTGGAAAAGCTGCAGGGGC GGAGACGACGACTCCTACTACGACAACGAACAAGAAAGAGTCACCGGCGGCTTACAACGATGTGATTGAAGAGACAAAGAAGAAGCTTATGGAAGAGAGG AAGAACAAGGTGAAGGCTTTGGTGGGTGCTTTCCAGACAGTCATTGATTATGAAACGGCTGGTTCTAAGTCTACCTCCTCTTTCTAA
AA sequence Show only first row Show all	>Lus10042442 pacid=23153842 polypeptide=Lus10042442 locus=Lus10042442.g ID=Lus10042442.BGIv1.0 annot-version=v1.0 MATKPKESIPKKDGKKATTTTTKTTTTTTVSHRQPPPSTSLPAGPANLKSTSSSRSVPLRPKAATSNPQSQPSKSTTGKSITNNGKASSSSDQKSAALVR RRSFDSRPAAPSSSRVQRSVISPARSSTRSSAAAPIRTSSFNPKTTASSSSSRPATLERSATSVRTAAPRSVAARNKIRRSASPPSRRRNNNSTSTTSNA AATKATNKNNIKNVGRSITKSGSSNNNVAGKMVNKLAAAEKVTAGETAGKMNHNNNNEDINMRLDNEIQQVGDHEYLISEDEQSVNLDNLELESSCASPE LPGSPALNPNPDVDSVEINHVDDRSHEDKEEEDDDGADEKVMDSVTSSADDAKEKEESEEEEERTVLQAAISDPSNGDNEKVEEEKNLDDEETAVVEGKD HQAGEDDDDDGGEVKGGEEVEEYETPMGGADHPVASMDVVVDKEKEKEEAKEEGDDQEEKIGKAAGAETTTPTTTTNKKESPAAYNDVIEETKKKLMEER KNKVKALVGAFQTVIDYETAGSKSTSSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10660			calmodulin-binding protein-rel...		Lus10042442 [exp]	0	1
AT4G30850		HHP2	heptahelical transmembrane pr...		Lus10036605 [exp]	18.2	0.6401
AT1G03080			kinase interacting (KIP1-like)...		Lus10006607 [exp]	25.6	0.6348
AT5G18560	AP2_ERF	PUCHI	Integrase-type DNA-binding sup...		Lus10026053 [exp]	26.8	0.6500
AT5G36250			Protein phosphatase 2C family ...		Lus10012218 [exp]	27.4	0.6361
AT2G25920			unknown protein		Lus10001457 [exp]	36.5	0.6077
AT1G06330			Heavy metal transport/detoxifi...		Lus10028331 [exp]	41.0	0.6094
					Lus10010925 [exp]	44.5	0.6317
AT5G55150			Protein of unknown function (D...		Lus10007081 [exp]	46.2	0.6104
AT3G62200			Putative endonuclease or glyco...		Lus10038949 [exp]	60.6	0.5959
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040923 [exp]	66.9	0.5998

Compare expression of checked genes

Lus10042442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.