Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10650 199 / 5e-57 RING/U-box superfamily protein (.1.2) AT5G24870 179 / 9e-50 RING/U-box superfamily protein (.1.2) AT4G31450 127 / 2e-31 RING/U-box superfamily protein (.1) AT1G17970 85 / 1e-17 RING/U-box superfamily protein (.1) AT4G34040 80 / 1e-15 RING/U-box superfamily protein (.1) AT2G15530 78 / 5e-15 RING/U-box superfamily protein (.1.2.3.4) AT5G42940 77 / 1e-14 RING/U-box superfamily protein (.1) AT3G15070 76 / 1e-14 RING/U-box superfamily protein (.1.2) AT1G73760 75 / 3e-14 RING/U-box superfamily protein (.1) AT1G53190 68 / 6e-12 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026226 [exp] 795 / 0 AT5G10650 200 / 6e-58 RING/U-box superfamily protein (.1.2) Lus10020145 [exp] 483 / 3e-167 AT4G31450 224 / 4e-67 RING/U-box superfamily protein (.1) Lus10026941 [exp] 465 / 5e-160 AT5G24870 257 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10024810 [exp] 87 / 9e-18 AT5G42940 316 / 4e-98 RING/U-box superfamily protein (.1) Lus10034644 [exp] 82 / 2e-17 AT1G17970 139 / 3e-39 RING/U-box superfamily protein (.1) Lus10013497 [exp] 81 / 4e-17 AT1G73760 199 / 1e-62 RING/U-box superfamily protein (.1) Lus10021722 [exp] 82 / 5e-17 AT1G17970 159 / 1e-45 RING/U-box superfamily protein (.1) Lus10007967 [exp] 81 / 1e-16 AT1G73760 188 / 8e-58 RING/U-box superfamily protein (.1) Lus10010372 [exp] 79 / 4e-15 AT5G42940 353 / 2e-112 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G274700 [exp] 363 / 2e-119 AT5G24870 263 / 4e-81 RING/U-box superfamily protein (.1.2) Potri.018G005600 [exp] 327 / 1e-105 AT5G24870 284 / 6e-89 RING/U-box superfamily protein (.1.2) Potri.002G124300 [exp] 90 / 1e-18 AT5G42940 377 / 3e-121 RING/U-box superfamily protein (.1) Potri.005G139900 [exp] 83 / 2e-16 AT4G34040 160 / 1e-41 RING/U-box superfamily protein (.1) Potri.015G043900 [exp] 81 / 4e-16 AT1G73760 258 / 2e-83 RING/U-box superfamily protein (.1) Potri.007G045500 [exp] 81 / 6e-16 AT4G34040 163 / 1e-42 RING/U-box superfamily protein (.1) Potri.012G053800 [exp] 79 / 2e-15 AT1G73760 271 / 2e-88 RING/U-box superfamily protein (.1) Potri.001G304900 [exp] 79 / 3e-15 AT4G34040 370 / 4e-118 RING/U-box superfamily protein (.1) Potri.001G373700 [exp] 77 / 1e-14 AT1G53190 354 / 1e-116 RING/U-box superfamily protein (.1.2) Potri.011G097100 [exp] 75 / 5e-14 AT1G53190 372 / 2e-123 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10042443 pacid=23153901 polypeptide=Lus10042443 locus=Lus10042443.g ID=Lus10042443.BGIv1.0 annot-version=v1.0 ATGGATGACTACTCTAGTAAGAGAAGAAACGATGGCCTTTTTGTCTCTAGGAAAGGATCTTCACTTGCTCTACGGGACGCTACTGCCAGTAACAAAGATC AGAGTCCTCAGTTTTGCACTCGGATTGGGTGTAGTGGCAGACTAAACTCTGCTAAAGCTACTCAAATCAACTATTCTGCTAAACCAAAGTTCTCCAGGCC ATCGATTCGTTCTGCTTCCTCAACTGGCAAGGAAATTGTTGCAAGTTCCTCTCCGGCTAATTTGGCAATTAGAAATACAAGGAAATCCTTCCCCAGCTGT GCCAAGAAGTTTCCTTCTCGTGCTGAATCAGATTCTTCAGAGAATGCTAGCGTTGTCGAAGATGAGCCTGATGTTCACGAAATTGATCCTCCCTTGAGAA AGCTTCATAAAGGCGATCATCAGTCCTGTTCTGCAACTATAAGTACACAGGTGCGGAGCACGAGTTTAGCATCGTGTACATTGTCCAATGGAGATTTTCA TCGCAAGTCAATGCTAGGGAATCCCAATACTCTAGCAAGCACTTCTTCTCCACTGTCTTTGAAAAACACAGTCCAAGGAAGATATTCAAATGTGGGCAGG AATGGTCTGAGAAATTTTAGGTGCAATTCAGTGACGGATGCTGTCTCTTCAAGTTCATCGTCGTCTTTGTCTTCATCATCATCATCATCATCATCAGACT TGAACCTTAACAAACGAAAGGATCCATTGAAAAAAAGGGTGTTCCACGGAGAGAGCAGTTCCTCTGCCAGAGGGAAAAAGACGTCTGGCTCATCTCCAGA AGGGCTGCAAAGTTCCACGAGTAGGGTATTCATCTCCGATGCTAGACGAGCCAGGATTGGCCCCACTATTAGGGATAATCCCGTCTCATCTGTTAGAACT CGGAGATCGATAACTGGTTATAGTTACAACAGGTCTCTAGGGACTAGAAACAATTTATCAGTAAGTGAGGTTGTCCCACAAGTTCCGAATCATGACATCA GTTTTGATCTGAGTAATTCTACTTCATCACATCAGTTGTTCGTGGAACCGTCTCTAGATTGCCCTTCACTTAATCGGATTGGTAGCAGCGGTGGAAGAAG TTCTCGGGGTATCAGGCGGCCATCGAGTCCTGCAGAAATCGACGACATGAGATCCTTATTAAACAGGGAGAGTTCCAGACGATACAACATGGATGGAATC GCCGAGGTGATGTTGGCACTTGAGGGGCTTGGACAAGATGAAGAGCTAACATATGAAGAATTGTTAGCTTTGGAAGATAGAATGGGTACTGTGAGCACAG GTGTAAAAGATGAAGAGTTGACAAGATGCCTCGAGAGTAGCATCTATCAGGTGGGATCCATGGAGGGTGCATTTGAGAACCTTGGTGCAGATACAGAGGA TACTAAATGCAGTATTTGCCAGGAAGAGTATGAAGAAGGTGATGAACTGAGAGGGCTAAAGTGCGAGCATAAGTATCACATGAAGTGCATACATCAATGG TTGAGGCTGAAGAACTGGTGCCCGGTCTGTAAGGCATCAGCAGTGCCCACCTTGTCTTCTGCTGCTGCTGCTGCTTCCTCGTCACTTTGA
AA sequence Show only first row Show all	>Lus10042443 pacid=23153901 polypeptide=Lus10042443 locus=Lus10042443.g ID=Lus10042443.BGIv1.0 annot-version=v1.0 MDDYSSKRRNDGLFVSRKGSSLALRDATASNKDQSPQFCTRIGCSGRLNSAKATQINYSAKPKFSRPSIRSASSTGKEIVASSSPANLAIRNTRKSFPSC AKKFPSRAESDSSENASVVEDEPDVHEIDPPLRKLHKGDHQSCSATISTQVRSTSLASCTLSNGDFHRKSMLGNPNTLASTSSPLSLKNTVQGRYSNVGR NGLRNFRCNSVTDAVSSSSSSSLSSSSSSSSSDLNLNKRKDPLKKRVFHGESSSSARGKKTSGSSPEGLQSSTSRVFISDARRARIGPTIRDNPVSSVRT RRSITGYSYNRSLGTRNNLSVSEVVPQVPNHDISFDLSNSTSSHQLFVEPSLDCPSLNRIGSSGGRSSRGIRRPSSPAEIDDMRSLLNRESSRRYNMDGI AEVMLALEGLGQDEELTYEELLALEDRMGTVSTGVKDEELTRCLESSIYQVGSMEGAFENLGADTEDTKCSICQEEYEEGDELRGLKCEHKYHMKCIHQW LRLKNWCPVCKASAVPTLSSAAAAASSSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10650			RING/U-box superfamily protein...		Lus10042443 [exp]	0	1
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10026553 [exp]	1.4	0.8437
AT3G25570			Adenosylmethionine decarboxyla...		Lus10019146 [exp]	2.4	0.8536
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10040806 [exp]	7.9	0.8393
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10036064 [exp]	12.0	0.7910
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	14.3	0.8164
AT2G45330		TRPT, EMB1067	2' tRNA phosphotransferase, em...		Lus10009289 [exp]	17.9	0.8004
AT4G09760			Protein kinase superfamily pro...		Lus10028728 [exp]	21.9	0.7947
AT1G78070			Transducin/WD40 repeat-like su...		Lus10036428 [exp]	22.2	0.8229
AT4G16770			2-oxoglutarate (2OG) and Fe(II...		Lus10007820 [exp]	26.6	0.7955
AT5G26040		HDA2	histone deacetylase 2 (.1.2)		Lus10024990 [exp]	26.7	0.8043

Compare expression of checked genes

Lus10042443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.