Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24530 386 / 9e-133 unknown protein AT4G31440 330 / 3e-111 unknown protein AT2G14850 171 / 1e-50 unknown protein AT4G33890 168 / 1e-48 unknown protein AT5G67410 82 / 3e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026225 [exp] 711 / 0 AT2G24530 347 / 1e-117 unknown protein Lus10026942 [exp] 545 / 0 AT2G24530 351 / 7e-119 unknown protein Lus10020146 [exp] 544 / 0 AT2G24530 346 / 4e-117 unknown protein Lus10011423 [exp] 187 / 4e-56 AT4G33890 294 / 3e-98 unknown protein Lus10002119 [exp] 185 / 4e-55 AT4G33890 297 / 2e-99 unknown protein Lus10011422 [exp] 157 / 8e-44 AT2G14850 278 / 5e-92 unknown protein Lus10002120 [exp] 73 / 2e-15 AT2G14850 112 / 2e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G005700 [exp] 524 / 0 AT2G24530 443 / 8e-155 unknown protein Potri.006G274800 [exp] 508 / 0 AT2G24530 415 / 1e-143 unknown protein Potri.001G037500 [exp] 234 / 3e-74 AT2G24530 236 / 2e-74 unknown protein Potri.009G090500 [exp] 217 / 3e-67 AT4G33890 305 / 4e-102 unknown protein Potri.001G296300 [exp] 212 / 3e-65 AT4G33890 325 / 2e-110 unknown protein Potri.003G187400 [exp] 202 / 1e-61 AT2G24530 229 / 7e-72 unknown protein Potri.009G090400 [exp] 198 / 4e-60 AT4G33890 318 / 2e-107 unknown protein Potri.001G296200 [exp] 192 / 7e-58 AT4G33890 295 / 3e-98 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042444 pacid=23153510 polypeptide=Lus10042444 locus=Lus10042444.g ID=Lus10042444.BGIv1.0 annot-version=v1.0 ATGCAGCCTCAGCAGAGCTCCAGAATCGATCTGGTCGAACTTAAAAGTCAGATAGTGAAGAAGATTGGGACTGAGAGGTCAAAGAAGTATTTCTTTATCT TAAATAGGTTTCTTAGTCAGAGACAAAGTAAGAGTGATTTCGATAAATCTTGTTTCCGCTTGCTTGGTAGGGAGAATCTCCCGTTACACAATCAGCTTAT TCGGGCGATTCTGAAGAATGCTTGCCTGGCAAAGACTCCTCTGCCAATTCATGACTCGGGTCCAGCAAAATCCGCAATTCAGATGGCAAAATGTTCTTCT GAAAGAGAAGATGTTCATGCACAGAGTGGAGCCCTTCTTCCAAATCACAGTCAAAATGTGCCAATTTGGTCCAACGGTGTATTGCCTGTGTCCCCTCGGA GAATCAGGTCATGTATGCGTGATAGGAAGATTCGAGATAGGCCTAGCCCGCTTGGACCAAATGGAAAAGTTGATTGTGTTACAGACAATGGGGATTTTAG CCCATGTGATTTTCAGAGACCCTTGCAGCACCTTCAAGCAGTTGCTGAGCAGCCTGAGAATGAAAAGGCAGCATTGGTTCAACGATCCATGGAAAATCCA AGGGCACAGAGCAAAGACCGGACCACGTTAGACCGAAGCCAGGTATTCCCACCACTTGGAATTCCATCTTGCTTAGCTAGCATTTCTGGGGCCCGCAAAG CTAGACCCGTGACAAGTTCTGGTGAATTTGGCGTCTGCTACAATAGTGGTATCTTGTCTGATACAGAGATGTTGAAGCAGCGTATGGAGCAGATTGCAGT TTCACAGGGCCTTGAAGGAGTTTCAATGGATTGTGCAAATATGTTGAATAACATGTTAGACATGTACTTGGGTAGGTTGATAAAGTCTTGTGTTGAACTG GCTCGGGCAAGAGCTCCTCATCATGATCAGAGAAAACAACCCGGCCTCAAACAACAGTTAATGGGAAAACTTGTCAATGGCGTATGGTCTAGCAATCACT TGCTCATGCAGAATAGCAACGGATCCATGGAAGCTATGCAAGAACAAAAACCACGCTGTTCAATATCTTTGCTCGATTTCAAAGTAGCCATGGAGTTAAA TCCACAGCAACTAGGTGAAGATTGGCCATTGCTGTTAGAGAGAATCTCCATGCATTCGTTCGAAGATTGA
AA sequence Show only first row Show all	>Lus10042444 pacid=23153510 polypeptide=Lus10042444 locus=Lus10042444.g ID=Lus10042444.BGIv1.0 annot-version=v1.0 MQPQQSSRIDLVELKSQIVKKIGTERSKKYFFILNRFLSQRQSKSDFDKSCFRLLGRENLPLHNQLIRAILKNACLAKTPLPIHDSGPAKSAIQMAKCSS EREDVHAQSGALLPNHSQNVPIWSNGVLPVSPRRIRSCMRDRKIRDRPSPLGPNGKVDCVTDNGDFSPCDFQRPLQHLQAVAEQPENEKAALVQRSMENP RAQSKDRTTLDRSQVFPPLGIPSCLASISGARKARPVTSSGEFGVCYNSGILSDTEMLKQRMEQIAVSQGLEGVSMDCANMLNNMLDMYLGRLIKSCVEL ARARAPHHDQRKQPGLKQQLMGKLVNGVWSSNHLLMQNSNGSMEAMQEQKPRCSISLLDFKVAMELNPQQLGEDWPLLLERISMHSFED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24530			unknown protein		Lus10042444 [exp]	0	1
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	4.4	0.8515
AT5G19420			Regulator of chromosome conden...		Lus10009701 [exp]	4.5	0.8317
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10008356 [exp]	5.5	0.8190
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10033838 [exp]	8.7	0.8229
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032871 [exp]	10.0	0.8024
AT3G09100			mRNA capping enzyme family pro...		Lus10035534 [exp]	13.9	0.8281
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10015664 [exp]	15.0	0.7955
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10020116 [exp]	19.1	0.8127
AT4G21100		DDB1B	damaged DNA binding protein 1B...		Lus10020922 [exp]	20.8	0.8035
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10042811 [exp]	21.2	0.7743

Compare expression of checked genes

Lus10042444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.