Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24520 1382 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT2G07560 1362 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT3G42640 1355 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT1G80660 1291 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT4G30190 1291 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G18960 1288 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT5G57350 1277 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT3G47950 1237 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT5G62670 1237 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G60330 1179 / 0 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026224 [exp] 1472 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10026946 [exp] 1446 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10001631 [exp] 1338 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10024105 [exp] 1301 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10003259 [exp] 1239 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 1239 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10001437 [exp] 1198 / 0 AT4G30190 1314 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10013483 [exp] 1160 / 0 AT4G30190 897 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10019593 [exp] 1159 / 0 AT3G42640 1455 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G006000 [exp] 1465 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G275000 [exp] 1402 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G005900 [exp] 1375 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G165900 [exp] 1348 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.018G090300 [exp] 1347 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G188600 [exp] 1310 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G112400 [exp] 1308 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.014G046300 [exp] 1248 / 0 AT3G60330 1462 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Potri.015G066000 [exp] 1246 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 1242 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10042445 pacid=23153589 polypeptide=Lus10042445 locus=Lus10042445.g ID=Lus10042445.BGIv1.0 annot-version=v1.0 ATGGCGGCTAATAAGGGGATCAATCTTGAAGAGATTAAGAACGAATCTGTTGATCTGGAAAAAATCCCTATCGAGGAAGTGTTTGAGCAGCTAAAATGTT CCAGGGAAGGTCTCACTTCCGACGAAGGGGCCAGCCGGCTTCAGGTTTTTGGACCCAACAAACTAGAAGAGAAAAAGGAGAGCAAGGTACTCAAGTTTTT GGGGTTTATGTGGAACCCGTTGTCATGGGTCATGGAAGCTGCTGCTATTATGGCATTAGCGTTGGCCAACGGCGGTTTCATAGAGGAAAATAATGCTGGT AATGCAGCTGCCGCACTTATGGCTGGCCTTGCCCCCAAGACTAAGGTTCTCCGAGATAGTCACTGGACTGAACAAGAAGCTGCAATCTTGGTTCCAGGAG ACATTATCAGCATTAAGTTGGGAGACATTGTCCCAGCTGATGCACGTCTTCTAGAAGGTGATCCTCTCAAGATTGATCAATCTGCTCTTACTGGGGAGTC ATTGCCAGTAACTAGGAACCCTTACGACGAAGTTTTCTCCGGCTCAACTTGCAAGCAAGGTGAAATTGAAGCTGTTGTTATAGCCACTGGTGTGCATACC TTCTTTGGTAAAGCTGCTCATCTCGTGGACAGCACCAATCAAGTAGGACATTTTCAGAAGGTTCTTACCGCTATTGGTAACTTCTGTATCTGCTCCATAG CTGTCGGGATATTAGTTGAGCTTCTAGTGATGTATCCCATCCAACACCGCAAGTACAGGGATGGGATTGACAACTTGCTGGTTCTTTTGATTGGAGGGAT TCCTATCGCTATGCCAACCGTTTTATCTGTCACCATGGCTATTGGCTCCCACAGGCTCTCTCAACAGGGGGCTATTACCAAGAGAATGACCGCCATTGAG GAAATGGCCGGGATGGACGTCCTATGCAGTGACAAGACTGGAACTCTCACGTTGAACAAGCTTTCTGTTGATAAGAACTTGATTGAAGTATTCGTAAAGG GTATGGACAAAGAGCATGTTATGCTTCTTGCGGCTAGAGCTTCAAGGACTGAGAATCAGGATGCTATTGATGCTGCTATAGTGGGGATGCTAGCAGACCC TAAAGAGATATTGAACCTGTGCAATTGCAAGGAGGATGTTAGAAAGAAGGTTCATTCGGTTATTGATAAGTTCGCTGAACGTGGACTTCGATCTTTAGGA ATTGCACGACAGCAAGTCCCAGAAAAGAATAAAGACAGCCCAGGCGCTCCTTGGCAGCTTGTTGGTTTATTACCTCTTTTTGATCCTCCAAGGCATGACA GTGCTGAAACCATCAGAAGAGCTCTCCACCTTGGAGTCAATGTGAAGATGATTACTGGTGATCAACTTGCAATTGCCAAGGAAACAGGACGCAGGCTTGG GATGGGAACCAACATGTATCCCTCATCTTCGTTGCTAGGCCAGTCCAAGGATGGTTCTATTGCATCCATCCCCGTAGATGAATTAATTGAAAAGGCTGAC GGATTTGCTGGAGTGTTCCCAGAACACAAGTATGAGATTGTGAAGAGGCTACAAGAGAAAAAACACATATGCGGAATGACAGGAGACGGTGTCAACGATG CTCCTGCTCTGAAGAAAGCTGATATCGGAATTGCGGTTGCTGATGCCACTGATGCTGCCAGGAGTGCTTCTGATATAGTACTCACTGAGCCAGGACTCAG TGTGATCATTAGTGCGGTGCTCACTAGCCGAGCTATTTTTCAAAGAATGAAAAATTATACATTAGATGCTGACAAGTCAAGTGCCTCTGCTATTTTTCTG CAGATATATGCGGTCTCCATTACTATTCGTATCGTTCTTGGCTTCATGTTGATTGCGTTGATATGGAAGTTTGACTTCTCCCCCTTTATGGTTTTGATCA TTGCCGTACTGAATGATGGAACAATCATGACAATATCAAAGGATCGAGTAAAACCATCTCCACAGCCAGACAGCTGGAAGCTGAAGGAGATCTTCAGTAC TGGTGTGGTACTCGGAACGTACATGGCAGTAATGACAGTAGTTTTCTTCTGGGCAATGAAAGACACCAACTTCTTCTCGGACAAGTTCCACGTGAGGCCG TTGCAAAACAGACCAGACCAGATGATGTCAGCTCTATACTTACAAGTGAGTATAGTGAGTCAAGCCCTCATTTTCGTGACAAGGTCCCGCAGCTGGTCCT TCGTTGAACTGCCCGGGAAGCTTCTTGTCGCGGCTTTCTTTGTTGCACAACTGATAGCAACGCTGATAGCGGTGTATGCCAACTGGGAATTTGCAAGGAT AAAGGGTTGCGGATGGGGTTGGGCTGGCGTCATCTGGCTTTACAGTGTGGTGACTTATGTTCCACTTGATATCCTCAAGTTTGCTATTCGATACGTTCTT AGTGGGAAGGCATGGGATAATCTGTTGGAGAACAAGACTGCGTTTACTACAAAGAAGGACTATGGTAAAGAGGAGAGGGAAGCACAATGGGCTACGGCAC AGAGAACCCTCCACGGACTTCAGCCTCCTGCTGAGGGGAGCACAAGCTTCTTTGCTGACAAGAGCAGTTACAGGGAGCTCTCTGAGATCGCCGAACAAGC TAAACGACGAGCTGAGGTCGCTAGGCTGCGGGAGTTGAATACTTTGAAGGGACACGTTGAGTCGGTGGTGAAGCTGAAAGGGCTCGACATCGACACAATT CAACAACACTACACTGTTTAG
AA sequence Show only first row Show all	>Lus10042445 pacid=23153589 polypeptide=Lus10042445 locus=Lus10042445.g ID=Lus10042445.BGIv1.0 annot-version=v1.0 MAANKGINLEEIKNESVDLEKIPIEEVFEQLKCSREGLTSDEGASRLQVFGPNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMALALANGGFIEENNAG NAAAALMAGLAPKTKVLRDSHWTEQEAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRNPYDEVFSGSTCKQGEIEAVVIATGVHT FFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGILVELLVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIE EMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGMDKEHVMLLAARASRTENQDAIDAAIVGMLADPKEILNLCNCKEDVRKKVHSVIDKFAERGLRSLG IARQQVPEKNKDSPGAPWQLVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQSKDGSIASIPVDELIEKAD GFAGVFPEHKYEIVKRLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTLDADKSSASAIFL QIYAVSITIRIVLGFMLIALIWKFDFSPFMVLIIAVLNDGTIMTISKDRVKPSPQPDSWKLKEIFSTGVVLGTYMAVMTVVFFWAMKDTNFFSDKFHVRP LQNRPDQMMSALYLQVSIVSQALIFVTRSRSWSFVELPGKLLVAAFFVAQLIATLIAVYANWEFARIKGCGWGWAGVIWLYSVVTYVPLDILKFAIRYVL SGKAWDNLLENKTAFTTKKDYGKEEREAQWATAQRTLHGLQPPAEGSTSFFADKSSYRELSEIAEQAKRRAEVARLRELNTLKGHVESVVKLKGLDIDTI QQHYTV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10042445 [exp]	0	1
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Lus10001754 [exp]	1.4	0.9612
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026224 [exp]	2.4	0.9588
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Lus10001844 [exp]	4.6	0.9517
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10023326 [exp]	4.7	0.9160
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10019452 [exp]	5.7	0.9324
AT4G26490			Late embryogenesis abundant (L...		Lus10032906 [exp]	7.7	0.9248
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Lus10042397 [exp]	7.7	0.9483
AT5G06850			C2 calcium/lipid-binding plant...		Lus10023823 [exp]	8.2	0.9223
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10043167 [exp]	8.4	0.9230
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10009321 [exp]	8.5	0.9398

Compare expression of checked genes

Lus10042445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.