Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12660 103 / 4e-26 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT2G24450 100 / 6e-25 FLA3 FASCICLIN-like arabinogalactan protein 3 precursor (.1) AT2G45470 99 / 1e-23 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT4G12730 96 / 2e-22 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT3G60900 85 / 1e-18 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT5G55730 83 / 6e-18 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT4G31370 74 / 5e-15 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026223 [exp] 278 / 4e-95 AT4G31370 66 / 5e-13 FASCICLIN-like arabinogalactan protein 5 precursor (.1) Lus10026957 [exp] 174 / 3e-53 AT2G24450 127 / 2e-35 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Lus10020158 [exp] 173 / 6e-53 AT2G24450 127 / 4e-35 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Lus10038004 [exp] 88 / 1e-20 AT2G45470 316 / 8e-108 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10012344 [exp] 88 / 1e-19 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10009235 [exp] 88 / 1e-19 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10006391 [exp] 88 / 2e-19 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10001178 [exp] 82 / 2e-17 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10016617 [exp] 77 / 1e-15 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G071700 [exp] 102 / 9e-25 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.018G005100 [exp] 100 / 1e-24 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G276200 [exp] 100 / 1e-24 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.001G037800 [exp] 94 / 3e-22 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.014G168100 [exp] 84 / 2e-18 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.001G367900 [exp] 77 / 7e-16 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.011G093500 [exp] 74 / 1e-14 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042446 pacid=23153497 polypeptide=Lus10042446 locus=Lus10042446.g ID=Lus10042446.BGIv1.0 annot-version=v1.0 ATGGAAATCAGAAACTTGATACTCACGATATGCAGCTGCATCATCTTGATCTCTCCAGCCGAATGCGTTGCACCCTACAATATAACCCGAGTACTTGAGG GATATCCCGAATACTCCCAATTCAACGAAGCCCTCAGCCAATCGAAACTAGCCGAGTACATCAACCGCAGAGAGAGAGTCATAACCGTCCTCGTCACCAG AGACGTAGGCTCCGTTACAGGGAAGCCACTCACAAGCATGCAGGCAGTCTTGAGCCTCCACATCCTCCTCGACTACCTCGACGCTACGAAAATCCGTAAC ATGAAACGCAGCGTCACATTCACCACAATGTTCCAGGAAACAGGAATCGCTACCGGCAACCAAGGCTACGTCAACTTCACCAAGACCGGAGGGGGCGATA ACGGCAACCAAATCATGATCGGTAACGGAAGGCGAGATGCTCAGTTATCCGTCAGCGTCGAAAGCCTTGTGATGACTAAGCCGCCGGTGCTCGCTCTTGT GGAGGTGAGTGGACTCATCAGTGCTCCTTGGGCTGACGACATTAAGGCCCCGCCACCACGCTCTCACAAGAAGAAGAAGCTTGCTCCGACTCCGAGCCCT TCCGATGCACCTTCACCTTCTCATCGTCGTAGACACAGGAACGTTGCTCCTTCTTCCGAAGCTGGCTCGCCTCCCGAGCCTGACGAAGACCCTGCGGATG CTGATGCTGATGCTGATTCCTCTGCTCCTGCACTTGCCAAAATATCTGATTCCTCGTCGCCTTCTGTTGCTGGTGGATTTGCGGCTTCAGTGTTCATTGG ATTGCTATATAGCCTCGTTAATGCTTGA
AA sequence Show only first row Show all	>Lus10042446 pacid=23153497 polypeptide=Lus10042446 locus=Lus10042446.g ID=Lus10042446.BGIv1.0 annot-version=v1.0 MEIRNLILTICSCIILISPAECVAPYNITRVLEGYPEYSQFNEALSQSKLAEYINRRERVITVLVTRDVGSVTGKPLTSMQAVLSLHILLDYLDATKIRN MKRSVTFTTMFQETGIATGNQGYVNFTKTGGGDNGNQIMIGNGRRDAQLSVSVESLVMTKPPVLALVEVSGLISAPWADDIKAPPPRSHKKKKLAPTPSP SDAPSPSHRRRHRNVAPSSEAGSPPEPDEDPADADADADSSAPALAKISDSSSPSVAGGFAASVFIGLLYSLVNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24450		FLA3	FASCICLIN-like arabinogalactan...		Lus10042446 [exp]	0	1
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10019568 [exp]	58.2	0.6712
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10036556 [exp]	74.6	0.6873
AT3G25280			Major facilitator superfamily ...		Lus10025881 [exp]	117.0	0.6324
AT1G78190			Trm112p-like protein (.1)		Lus10017505 [exp]	242.2	0.6212

Compare expression of checked genes

Lus10042446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.