Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19940 224 / 3e-73 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) AT3G26070 42 / 0.0002 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026221 [exp] 374 / 1e-132 AT5G19940 276 / 4e-94 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G276400 [exp] 262 / 3e-88 AT5G19940 279 / 2e-95 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Potri.003G020700 [exp] 42 / 0.0002 AT3G26070 244 / 6e-81 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G011700 [exp] 42 / 0.0002 AT1G51110 532 / 0.0 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G209600 [exp] 41 / 0.0005 AT3G26070 253 / 7e-85 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [flax] [poplar] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Lus10042448 pacid=23154024 polypeptide=Lus10042448 locus=Lus10042448.g ID=Lus10042448.BGIv1.0 annot-version=v1.0 ATGGCAACAGCCGCTGCTTCCTCCTTCACCTTGTTACCTTCCGTCTTTAAATCCAGAAGAACCCTCAGTACTGTTTCTTCTACATCTTTCAATTCCGTCT CGTTTGCGTATCACAAGCATCGAGGTGGCGGGAATTTGCGAATCGCTTGTTCCGCTACAGTTTCGTCGGACCCTCAACTTCGCACCGGTGAACCCGACGA ACTCGTCGCTTCCATCCTTTGCAAGGTGAAGCAGACAGATGGAGGCGTTTCTTTGAAGAGAGAAGAGCACCAACAAGTGGCTGAAGTTGCTCAGCAGCTG CAGGGCTACTGCGTTTCAGAGCCTGTGAAGTCCCCTCTCATATTTGGAGAGTGGGATGTGGCGTACTGTTCGAATCCAACTTCGCCAGGGGGAGGTTATA GGAGTGCGATCGGCCGTCTTTTCTTCAAAACGAAGGAAATGGTTCAGGCTCTTGAAGCTCCGGACACTGTCAAGAACAAGATCAAATTCTCCCTCTTGGG TTTCCTTGAAGGAGAGCAGTTTTACCGGATGGAATGGCTTCTGAAACTGGAAGAATGTGAAGCTAATGAGTCGAGGTTTCTATATATGTTGGACGCAGGA AAATTGAGAGCTCTGGACGGTAGCTGGATTCAGGTGATATTCGAGGCACCTCATTTTAAAGTCGGAGATCTTGATTTGCAGTACGGTGGTGAGAGCGAGG TGAAGCTGCAAATCACATACGTAGATGAGAAGATTAGGTTGGGGAAGGGATCCAGAGGTTCTTTATTTGTTTTCAAGAGAATCGGATAA
AA sequence Show only first row Show all	>Lus10042448 pacid=23154024 polypeptide=Lus10042448 locus=Lus10042448.g ID=Lus10042448.BGIv1.0 annot-version=v1.0 MATAAASSFTLLPSVFKSRRTLSTVSSTSFNSVSFAYHKHRGGGNLRIACSATVSSDPQLRTGEPDELVASILCKVKQTDGGVSLKREEHQQVAEVAQQL QGYCVSEPVKSPLIFGEWDVAYCSNPTSPGGGYRSAIGRLFFKTKEMVQALEAPDTVKNKIKFSLLGFLEGEQFYRMEWLLKLEECEANESRFLYMLDAG KLRALDGSWIQVIFEAPHFKVGDLDLQYGGESEVKLQITYVDEKIRLGKGSRGSLFVFKRIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19940			Plastid-lipid associated prote...		Lus10042448 [exp]	0	1
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10000057 [exp]	1.0	0.9191
AT1G64355			unknown protein		Lus10003895 [exp]	8.7	0.9067
AT5G38510			Rhomboid-related intramembrane...		Lus10000628 [exp]	11.0	0.8927
AT2G01918		PQL3	PsbQ-like 3 (.1)		Lus10002286 [exp]	12.6	0.9017
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10042461 [exp]	14.2	0.9042
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10006406 [exp]	16.4	0.8612
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10010419 [exp]	17.3	0.8744
AT1G12250			Pentapeptide repeat-containing...		Lus10024602 [exp]	17.8	0.8975
AT5G40500			unknown protein		Lus10002519 [exp]	17.9	0.8787
					Lus10025227 [exp]	21.4	0.8340

Compare expression of checked genes

Lus10042448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.