Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55490 508 / 5e-175 GEX1, ATGEX1 gamete expressed protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002182 [exp] 796 / 0 AT5G55490 579 / 0.0 gamete expressed protein 1 (.1) Lus10029726 [exp] 794 / 0 AT5G55490 572 / 0.0 gamete expressed protein 1 (.1) Lus10039900 [exp] 793 / 0 AT5G55490 575 / 0.0 gamete expressed protein 1 (.1) Lus10026220 [exp] 288 / 5e-93 AT2G44300 131 / 6e-37 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10001735 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G137100 [exp] 651 / 0 AT5G55490 579 / 0.0 gamete expressed protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042450 pacid=23153468 polypeptide=Lus10042450 locus=Lus10042450.g ID=Lus10042450.BGIv1.0 annot-version=v1.0 ATGATTTACCCGTATGATTCACATCAAGTTCTGTTGCCTCTCCTTGCTTGCCTCTTATTCACCACCTCCGGCTGTCATTCCTGGGGATGGTTCTCTTCTG CGGCTTCCAGCGGCGATTTTGGTTCCAGTTCCAACAATCACGTGTCGGTGGCCGATTTCTCGATGGATGTTCCTGCGGACAGCAAAGGATTGGTAGACAA GGCGAGGGATAAATTGGTTGGTTCCAACTCTTGCTGGCAAAATGCTTACCAGCACATCTTTTCTGGTTGCACCCAAATTCTTGCCAACGAAGAGAAAAAC TTCAGATTCGCTTGGCATCTTAGTAATTGCTTTCAGAAAGATTCCGGGAGGCGGCCATTCCCTCACTGTGATGACAACAAAGCTATGGCTCATTGTCTGG AGAAGTTGGATGATCATCAACACAAGATTTATCTGGAGTTCTTGCTCCAAACCAACACCATCTGCTACCAACTCCAGGCACATGGCTTCAGAAGGGAAAC AGAGAGACTGGTGAATGAACTGAAGAGTTCAGCGCAATACACGGAGAGAGAGTTGGAGATTATAAAAGGCACAACATTTACAGTGCTGCAGAACTCGAAT CAGATACACGAGTCGTTGAGTTTGGTGGATCTCATGGTTCAAGAAGTGGTTCGGACGGCTAAGGATGTAGAGGGCCAGATCGATACCTTGTCAAAGAAGT CAGAAGCGGTTTTCCAAAAATCGGAGGAAATCGTGGAGTCGCAAACACAGCTGGAGGCAGGACAAGAGAGAATGAATGAAAATTTGAAAGCTGGGGTGAC AATGCTTCATGATGCTTACAGCAACTTGGGCGAGGAAGTTAGCAACTTGAGGAACGAGGCTGTCGAGATAGAGAAGCATATTGATCAAGTCGGAGAGTCT ATGTCGTCCAGGTTTCAGAATCTGCAGAGCAAAGCTGATGATATTGAGCATCTTGCTGGGAGTTCCTTGAACAAGCAACAAGAACTTCTAGATGGACAGT CCACAGCACTCCATGGTCTTCACATCTTGACAGAATCTCAATCTGTCGCACTCCAAGAAAGCAGGAAAGCCATGGAACATTTAGCTGATCTGGGTCGTAA ACAGCAGGAAGAGCTTCTGGAAAGGCAGCAACAGCTTCAACAAGTTCATGATCACCTAGTTTCAAACTCGAAATCAATACTGGCAGCACAGGAAGATTTC GAGGCGAAACAAGCTACCATGTTTGTTGCTCTAGACAAATTGTTCGCTCTACACAACGCAATGTTGCTCGAATCACGTGTAATCAAAGCCTTCTTCGTCT ACACCATCTCCATTTTCGTCATCTACATGTTCACCAGTACCAAGCAGACGTATCCTGTGCGAGCCAACCTCTATCTCGGTCTATGCACTACATTCCTTGT CGAAGTAGCGATCATTCGACTTTCAAGACCAGGTACTGATGTTCAGCATCAAGCGTGGATAATCAATCTGGTCAGATTGGTCTTTGCGTCGCTAGCCATT CTTCAAATTCTATATGCCATCTGCACATACAGAGACTATGAAGTATTGACTCATCAAATGATCCTGACATTGACAGAGAAGATCGATTCCATGCAAAGAG AAGCATTATCATGGGTCACAGACAGTGATGATGTCTGCAGTTCAGAGGATCCTGATTTCAAGATTCCAGAAGAAATGACAGTGAAACCAATTGTACGCGC TCCCGTGGCAAGAAAGTATGATCTCAGGCCACGCTGTCGTTAA
AA sequence Show only first row Show all	>Lus10042450 pacid=23153468 polypeptide=Lus10042450 locus=Lus10042450.g ID=Lus10042450.BGIv1.0 annot-version=v1.0 MIYPYDSHQVLLPLLACLLFTTSGCHSWGWFSSAASSGDFGSSSNNHVSVADFSMDVPADSKGLVDKARDKLVGSNSCWQNAYQHIFSGCTQILANEEKN FRFAWHLSNCFQKDSGRRPFPHCDDNKAMAHCLEKLDDHQHKIYLEFLLQTNTICYQLQAHGFRRETERLVNELKSSAQYTERELEIIKGTTFTVLQNSN QIHESLSLVDLMVQEVVRTAKDVEGQIDTLSKKSEAVFQKSEEIVESQTQLEAGQERMNENLKAGVTMLHDAYSNLGEEVSNLRNEAVEIEKHIDQVGES MSSRFQNLQSKADDIEHLAGSSLNKQQELLDGQSTALHGLHILTESQSVALQESRKAMEHLADLGRKQQEELLERQQQLQQVHDHLVSNSKSILAAQEDF EAKQATMFVALDKLFALHNAMLLESRVIKAFFVYTISIFVIYMFTSTKQTYPVRANLYLGLCTTFLVEVAIIRLSRPGTDVQHQAWIINLVRLVFASLAI LQILYAICTYRDYEVLTHQMILTLTEKIDSMQREALSWVTDSDDVCSSEDPDFKIPEEMTVKPIVRAPVARKYDLRPRCR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10042450 [exp]	0	1
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10036768 [exp]	3.7	0.7246
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10032612 [exp]	3.7	0.6831
AT5G06270			unknown protein		Lus10016982 [exp]	10.4	0.7154
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10019916 [exp]	13.7	0.7164
AT5G42890		ATSCP2	sterol carrier protein 2 (.1)		Lus10021727 [exp]	14.6	0.7325
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Lus10042141 [exp]	16.7	0.6417
AT1G04360			RING/U-box superfamily protein...		Lus10024881 [exp]	17.0	0.6680
AT5G11960			Protein of unknown function (D...		Lus10013530 [exp]	18.8	0.6975
AT5G06270			unknown protein		Lus10021305 [exp]	24.6	0.6667
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10040677 [exp]	28.5	0.6446

Compare expression of checked genes

Lus10042450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.