Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05740 780 / 0 RECQI1 RECQ helicase l1 (.1) AT1G10930 394 / 6e-124 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT1G60930 390 / 2e-122 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT1G31360 334 / 2e-105 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT4G35740 326 / 3e-102 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT1G27880 181 / 3e-48 DEAD/DEAH box RNA helicase family protein (.1) AT5G27680 152 / 1e-38 RECQSIM RECQ helicase SIM (.1) AT3G06480 64 / 2e-10 DEAD box RNA helicase family protein (.1) AT3G01540 63 / 4e-10 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G26742 58 / 2e-08 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026219 [exp] 1119 / 0 AT3G05740 816 / 0.0 RECQ helicase l1 (.1) Lus10015467 [exp] 388 / 2e-120 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10033289 [exp] 330 / 3e-103 AT1G31360 949 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10034749 [exp] 309 / 9e-96 AT1G31360 853 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10041840 [exp] 291 / 6e-88 AT4G35740 879 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10028387 [exp] 246 / 2e-72 AT4G35740 778 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10034434 [exp] 232 / 5e-66 AT1G31360 280 / 2e-82 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10004503 [exp] 162 / 6e-42 AT5G27680 912 / 0.0 RECQ helicase SIM (.1) Lus10019129 [exp] 99 / 1e-22 AT5G27680 109 / 9e-27 RECQ helicase SIM (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G019800 [exp] 849 / 0 AT3G05740 828 / 0.0 RECQ helicase l1 (.1) Potri.003G015800 [exp] 383 / 2e-119 AT1G10930 1329 / 0.0 DNA helicase (RECQl4A) (.1) Potri.003G104300 [exp] 339 / 3e-107 AT1G31360 986 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.005G107400 [exp] 323 / 1e-100 AT4G35740 850 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Potri.013G161200 [exp] 258 / 4e-75 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.010G056500 [exp] 186 / 1e-49 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.005G026400 [exp] 160 / 3e-41 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.010G152400 [exp] 67 / 2e-11 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.001G347100 [exp] 62 / 8e-10 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.017G071400 [exp] 59 / 5e-09 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10042451 pacid=23153527 polypeptide=Lus10042451 locus=Lus10042451.g ID=Lus10042451.BGIv1.0 annot-version=v1.0 ATGGCGGAGCATGATCTGGAGGTGGAGAAAGCTCGATTGATAAGCTTGGCTCTTGATTGCGGCTTCGACGAGGAATCTGCCAACAAGTGCGTAGACCGAT TAATTTCTCTCTATGGCGAGGATGGAAGAGATTTCATCTCTGTCGAGTACTGCGGCGAAGATTTCTTGGCGTCGCTGGCTGCATCAATGGAGGATTCTGA GGACTGGGACGAGGCTGACTTGCGAGCCATCGAATCCGAAGCATGTGGCACCTTGAATGACATGTTTGAAAATGAGATTGCTGCTCCTGACTCGAACAGC AACAGAGTGGAAAGCAGTAGTAGCTACATCGATCTCAGCGATGATGATTTGTCTCGAAGGAAGAAGAAGAGGCAACCACCCGACGTTATGCTACTGGACT CTTCCTCGAGTGATGGTGATGCTGATGGCCTTGTTTTTCCCATCTCCCGAAGGAAGAGTACTGTAATTACTGCGACTCCCTCCTCACTCAACCGTTCTTC TGTATCTATGGAGCGGAGGACCACTGCTGCTACTCCGGGTTCAGTTTCATCAAGCGGCTACAAAGCCCCCGTGTCAAATAATGGGCTTCTGAGTTATGAG CAATTGCAAGCGTTGGATGATATTGAGTTGGCTAATGTTGTAATATTTGGCAACAAGGCTTTACGACTGTTGCAGCATAAGGCTTGTAAAGCATCTATTG AAAAACGAGATTGTTTTGTTCTTATGCCAACTGGAGGTGGTAAAAGTCTATGCTACCAGCTTCCTGCAACTCTGAAGCCAGGTGTGACAGTAGTTGTATC TCCATTACTGTCCCTCATTCAGGACCAAATTGTTACCTTAAACCTTAAATTTGGGATACCTGCAACTTTCTTGAATTCTCAGCAAACGTCTTCTCAGGCA GCAGCAATCATCCAAGAATTAAGGAAAGAAAGACCATCATGTAAACTATTATATGTGACTCCGGAGAGGATTGCTGGAAACGCTTCCTTTTCTGAAACTC TCAAATGCTTGCATCACAAGGGCCTTCTGGCAGGTTTTGTTGTTGATGAAGCACATTGTGTCAGTCAGTGGGGGCATGATTTTCGCCCGGATTACAGGGG ACTGGGATGTCTTAAACAGAACTTCCCCAATGTCCCAGTCATGGCTTTGACGGCAACAGCGACCCACCCAGTTCGTCAGGATATATTAAAATCTCTAAGA ATTGAACGTGCTCTTGTCCTCGAAACAAGCTTTGATAGGCCTAATTTGAAGTATGAAGTCATTGCCAAAGCTAAAGACGCACTCAAACAGCTTGGAGAAA TCATCACAGACCGCTTCAAGAAACAATGTGGGATCGTGTACTGCTTGTCTAAGAATGAATGTGTCGAGGTTTCAAAGTTCTTGAATGACAAATGCAAGAT TAAGACGGCATATTACCATGCTGGTATTGGCACTCGCCAAAGAAGTGAGGTTCAAAATAAATGGCACAAGGGTGAGGTGCAGATTGTCTGTGCAACGATT GCCTTCGGGATGGGGATAGATAAAACTGATGTGCGCTTTGTGATTCACAATACTATGTCCAAAGCAATCGAAAGCTACTATCAAGAAGCTGGACGAGCTG GAAGGGATGGTAAACCTGCTGCTTGCATTGCCCTATTCCAGAAGAAGGATTTCAGTAGGGTTGTTTGTATGTTAAGGAGTGGACAAAGATATCAAAAGGC CAGCTTTAAGACAGCAATGGCGCAAGCAACAAAGATGAAGCAGTACTGTGAACTTAAGAACGAATGTCGTAGGCAAGCCTTGCTGGTACACTTTGAAGAG TCGTTTGATAGAAAAGCTTGCAAATCTGGTCCTAACCCGTGTGATAACTGCCTCAAAGCTTCCACATGA
AA sequence Show only first row Show all	>Lus10042451 pacid=23153527 polypeptide=Lus10042451 locus=Lus10042451.g ID=Lus10042451.BGIv1.0 annot-version=v1.0 MAEHDLEVEKARLISLALDCGFDEESANKCVDRLISLYGEDGRDFISVEYCGEDFLASLAASMEDSEDWDEADLRAIESEACGTLNDMFENEIAAPDSNS NRVESSSSYIDLSDDDLSRRKKKRQPPDVMLLDSSSSDGDADGLVFPISRRKSTVITATPSSLNRSSVSMERRTTAATPGSVSSSGYKAPVSNNGLLSYE QLQALDDIELANVVIFGNKALRLLQHKACKASIEKRDCFVLMPTGGGKSLCYQLPATLKPGVTVVVSPLLSLIQDQIVTLNLKFGIPATFLNSQQTSSQA AAIIQELRKERPSCKLLYVTPERIAGNASFSETLKCLHHKGLLAGFVVDEAHCVSQWGHDFRPDYRGLGCLKQNFPNVPVMALTATATHPVRQDILKSLR IERALVLETSFDRPNLKYEVIAKAKDALKQLGEIITDRFKKQCGIVYCLSKNECVEVSKFLNDKCKIKTAYYHAGIGTRQRSEVQNKWHKGEVQIVCATI AFGMGIDKTDVRFVIHNTMSKAIESYYQEAGRAGRDGKPAACIALFQKKDFSRVVCMLRSGQRYQKASFKTAMAQATKMKQYCELKNECRRQALLVHFEE SFDRKACKSGPNPCDNCLKAST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Lus10042451 [exp]	0	1
AT5G15170		TDP1	tyrosyl-DNA phosphodiesterase ...		Lus10018371 [exp]	1.0	0.8311
AT2G07680		ATMRP11, ABCC13	ATP-binding cassette C13, mult...		Lus10041661 [exp]	2.4	0.8213
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10007095 [exp]	3.0	0.7728
AT3G26950			unknown protein		Lus10035181 [exp]	6.0	0.7203
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10003203 [exp]	7.4	0.7343
AT2G17280			Phosphoglycerate mutase family...		Lus10032820 [exp]	11.3	0.6725
AT1G16590		REV7, ATREV7	DNA-binding HORMA family prote...		Lus10006836 [exp]	14.1	0.6918
					Lus10031082 [exp]	15.8	0.6186
AT5G50180			Protein kinase superfamily pro...		Lus10035233 [exp]	16.2	0.7120
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Lus10022034 [exp]	18.0	0.6978

Compare expression of checked genes

Lus10042451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.