Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53330 443 / 8e-153 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G18475 192 / 2e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G07740 187 / 4e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G46100 181 / 2e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 184 / 9e-51 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 182 / 1e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 180 / 6e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 176 / 9e-49 RPF2 rna processing factor 2 (.1) AT5G16420 175 / 1e-48 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62590 174 / 9e-48 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026218 [exp] 888 / 0 AT1G53330 440 / 2e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 196 / 1e-55 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 195 / 4e-55 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040869 [exp] 185 / 5e-53 AT1G07740 491 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005540 [exp] 183 / 7e-52 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038804 [exp] 184 / 2e-50 AT5G64320 367 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 183 / 2e-50 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 182 / 9e-50 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 181 / 2e-49 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G108500 [exp] 542 / 0 AT1G53330 483 / 1e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G103600 [exp] 208 / 2e-61 AT5G18475 546 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G204100 [exp] 192 / 9e-56 AT1G07740 502 / 2e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075900 [exp] 194 / 1e-54 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 194 / 1e-54 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G057900 [exp] 182 / 4e-52 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G147700 [exp] 186 / 5e-52 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G154800 [exp] 182 / 1e-50 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 182 / 3e-50 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 176 / 4e-48 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042452 pacid=23153916 polypeptide=Lus10042452 locus=Lus10042452.g ID=Lus10042452.BGIv1.0 annot-version=v1.0 ATGCAGCAACGCGCGAAGCTACCGAAGCTGATTTCTCCGTTCCGACAAGCATCTCTTCTGCGGATGGAGAAGGATCCGAAGCTTGCTCTTGACCTCTTCC GTAACCCAAATCCCACTCCCAATTCTCAAGCCTCCAGCAAGCCATTTCGTCGCTCTCTTCTTTCTTATGATCTCATCATCACCAAGCTTGGCAGCGCCAA AATGTTCCCCGAGATGGAGGAGGTCCTTTCTCAAATGAAGAGCGAGACCCGATTTGCTGCTAAAGAAGTCATTTTCTGCAACGTCATCAAGTTCTACGGC CGTGCTCGCCGACTTGAAGATGCAGTCAAACTGTTCGATGAAATTCCCTCGTTCCACTGTCGACGGACCACGAGGTCATTCAATTCGTTGCTAAACGCTT TTCTGATGTGCAAAGAAGCTGATAGAATGATGGAATTCTATGCAGGTATCGATGAATACGGACGACCCGATGCCTGTACTTACAATATTATGATTCGTGG GTGTTTCCTTAAGGGGTCGGTTGATCATGCCTGGAAGCTGTTCGATGAAATGCTTTGCAAAAGAATTTTCCCGACCATTGCAACTTTCGTGAGTTTTGTT AAAGGGCTTTGTTTGGCTAACAGGTTAGATGAGGCTGTGAAACTCAAGAACGATATGGTTAAGGTGTATGGGATCACTCCGAATGCATTTATCTATTCAT CGTTGATTAAATCGGTTTGTGGGATTGGTGAGTTGAATCAGGCTTTTCAGCTCAAAGATGAGATGGTTACAAAAGGGGTAGAATTGGATTCCCCTGTATA CTCGACTTTGATTAGCGGGCTTTTTGAAGCCGGTAGAAAGGAGGAAGCTTTGGAACTTTGGGAGGAGATGAATCGGAGTGAGTGTACACCCGATACGGTG ACGTACAATGTGATGATTAATGGGTTTTGCATGAACATGGATTTCAAAGCAGCCTACGATATGTTGGATAAAATGTCAGAGAGCGGGTGTAAACCAGACG TTGTGAGTTACAACATCATTCTCCGTGGGCTGTGCAAAGATGGGAGATTGATTTGCGCAAATGAGTTGTTTGAAAGCATGGCAGGGAGAGGCTGTTTACC TGACGTAATTTCGTATAGAATACTCTTCAGAGGGCTTTGTGATGGGATGCAGTTGAAAGATGCAGCTTTTATCTTGGACGAGATGACCTTCAAGGGCTTT ACTCCTCATACTAGCACCGTATGTGCTTTCGTTGAGAAGTTGTGCGAGGGGAGGAATAAGGTAATGCTTTGGTCGGTTTTGGATACACTTGCTAAGGGAA ATTCAATTGATGCAGAGTCATGGGCGGTGGTTGTAGACACCGTGACGTTTGGAGAAGATACGTTCAGTTTGATTTATGACCGTGTTGAAAGTTTGGTGGT GTCCTAG
AA sequence Show only first row Show all	>Lus10042452 pacid=23153916 polypeptide=Lus10042452 locus=Lus10042452.g ID=Lus10042452.BGIv1.0 annot-version=v1.0 MQQRAKLPKLISPFRQASLLRMEKDPKLALDLFRNPNPTPNSQASSKPFRRSLLSYDLIITKLGSAKMFPEMEEVLSQMKSETRFAAKEVIFCNVIKFYG RARRLEDAVKLFDEIPSFHCRRTTRSFNSLLNAFLMCKEADRMMEFYAGIDEYGRPDACTYNIMIRGCFLKGSVDHAWKLFDEMLCKRIFPTIATFVSFV KGLCLANRLDEAVKLKNDMVKVYGITPNAFIYSSLIKSVCGIGELNQAFQLKDEMVTKGVELDSPVYSTLISGLFEAGRKEEALELWEEMNRSECTPDTV TYNVMINGFCMNMDFKAAYDMLDKMSESGCKPDVVSYNIILRGLCKDGRLICANELFESMAGRGCLPDVISYRILFRGLCDGMQLKDAAFILDEMTFKGF TPHTSTVCAFVEKLCEGRNKVMLWSVLDTLAKGNSIDAESWAVVVDTVTFGEDTFSLIYDRVESLVVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53330			Pentatricopeptide repeat (PPR)...		Lus10042452 [exp]	0	1
AT4G18425			Protein of unknown function (D...		Lus10015395 [exp]	1.4	0.7487
AT1G33920		ATPP2-A4	phloem protein 2-A4 (.1)		Lus10040603 [exp]	3.6	0.6993
AT2G25830			YebC-related (.1)		Lus10038722 [exp]	4.0	0.7313
AT4G35380			SEC7-like guanine nucleotide e...		Lus10022975 [exp]	5.0	0.7266
					Lus10025864 [exp]	7.5	0.6869
AT3G08000			RNA-binding (RRM/RBD/RNP motif...		Lus10031534 [exp]	10.0	0.7509
AT1G69210			Uncharacterised protein family...		Lus10026674 [exp]	12.7	0.7465
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10022656 [exp]	15.5	0.6850
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10022378 [exp]	24.1	0.7028
AT1G10640			Pectin lyase-like superfamily ...		Lus10013025 [exp]	29.3	0.6242

Compare expression of checked genes

Lus10042452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.