Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14880 144 / 4e-42 unknown protein AT4G18690 119 / 8e-32 unknown protein AT4G18680 108 / 3e-28 unknown protein AT5G45830 103 / 1e-25 ATDOG1, GSQ5, DOG1 GLUCOSE SENSING QTL 5, delay of germination 1 (.1) AT4G18650 97 / 7e-24 transcription factor-related (.1) AT5G06950 81 / 1e-17 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT1G58330 79 / 3e-17 ZW2 transcription factor-related (.1) AT3G12250 79 / 8e-17 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06960 74 / 8e-15 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G09950 65 / 3e-12 RAS1 RESPONSE TO ABA AND SALT 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039193 [exp] 278 / 3e-94 AT3G14880 135 / 5e-39 unknown protein Lus10013746 [exp] 268 / 4e-90 AT3G14880 141 / 5e-41 unknown protein Lus10039196 [exp] 260 / 6e-87 AT3G14880 135 / 1e-38 unknown protein Lus10026217 [exp] 246 / 6e-83 AT3G14880 83 / 7e-20 unknown protein Lus10013711 [exp] 146 / 1e-42 AT3G14880 251 / 2e-84 unknown protein Lus10015276 [exp] 122 / 8e-33 AT4G18690 204 / 6e-65 unknown protein Lus10028231 [exp] 118 / 4e-32 AT1G58330 154 / 8e-47 transcription factor-related (.1) Lus10007282 [exp] 92 / 4e-22 AT4G18650 208 / 2e-67 transcription factor-related (.1) Lus10013747 [exp] 83 / 2e-20 AT4G18660 50 / 6e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098800 [exp] 268 / 6e-90 AT3G14880 159 / 6e-48 unknown protein Potri.001G390100 [exp] 137 / 3e-39 AT3G14880 255 / 3e-86 unknown protein Potri.004G058200 [exp] 118 / 8e-32 AT4G18650 226 / 1e-74 transcription factor-related (.1) Potri.001G029800 [exp] 71 / 7e-14 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.003G194600 [exp] 71 / 8e-14 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.008G118300 [exp] 66 / 3e-12 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.016G036500 [exp] 66 / 6e-12 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.006G039000 [exp] 64 / 2e-11 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.002G090700 [exp] 63 / 4e-11 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.005G170500 [exp] 62 / 1e-10 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042453 pacid=23153579 polypeptide=Lus10042453 locus=Lus10042453.g ID=Lus10042453.BGIv1.0 annot-version=v1.0 ATGCCGACCATGTCCGCCGCTAGGCCGACTGCCAGTACTATCGGAGGAGGAGGAGGAGGAGGAGGCATCTCGTCGTTCAAGGACTTCTTCGAACGATGGT TGGAGGAGCAGGATCAACTGCTAAAGATACTGACGTCAGCCGCCGCCGAAAACGGCGGCAACCAACCAGAGTTCCTCCGGGTTCTAGCTGATCGGGTCAT GGAGCACTACGAGATCTACTACCGGGCCAAGTCGGAGTGGGCTAGCCAAGACGTGTTAGCAATGTTGTCGCCTTCCTGGACTAGCTCTTTAGAGGACGCT TTCCTCTGGATCGGTGGCTGGCGTCCTTCCACGGCTTTCCATCTCCTCTACTCCAAATCGGGCCTCCAATTCAGCGCCACTGATCAGTCCACGATCCAAG CCCTACTCCGAAGCCTGAATTCGGCCGACGACCTAGCTGGCCTCTCCGCCGCCCAATTCCGCCGCATGGATGAGCTCCAGCGGCTGACCATCAGAGAGGA GAAGGTGATTACAGAGAGGATGGCGAAGGTGCAGGAATCTGTTGCGGACGCGTCCATGGTGGAACTCTCTCACACGATCACGGAGATGATGCGTAGTGAT AGTGGTGGTGGTGATCCGGTGGGGCCGAGCCTACTGAACGATGGGGTGGATACGGCGTTGATGACAAAGGAGAAGAAGATGGAGGAGATCTTGCAGTTGG CGGATGATCTACGGCTCTCCACCCTCAGATCGATCGTCGTTGACATCTTGACTCCCATTCAGGCCGTCCATTTCCTCATTGCCGTGGCTGAGCTCCACCT TAGGATCCATGATTGGGGAAAGCGGAGAGACGCCGGTCGCTAG
AA sequence Show only first row Show all	>Lus10042453 pacid=23153579 polypeptide=Lus10042453 locus=Lus10042453.g ID=Lus10042453.BGIv1.0 annot-version=v1.0 MPTMSAARPTASTIGGGGGGGGISSFKDFFERWLEEQDQLLKILTSAAAENGGNQPEFLRVLADRVMEHYEIYYRAKSEWASQDVLAMLSPSWTSSLEDA FLWIGGWRPSTAFHLLYSKSGLQFSATDQSTIQALLRSLNSADDLAGLSAAQFRRMDELQRLTIREEKVITERMAKVQESVADASMVELSHTITEMMRSD SGGGDPVGPSLLNDGVDTALMTKEKKMEEILQLADDLRLSTLRSIVVDILTPIQAVHFLIAVAELHLRIHDWGKRRDAGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14880			unknown protein		Lus10042453 [exp]	0	1
AT3G50390			Transducin/WD40 repeat-like su...		Lus10016779 [exp]	2.6	0.9820
					Lus10032742 [exp]	4.0	0.9683
AT5G25940			early nodulin-related (.1)		Lus10030052 [exp]	4.5	0.9755
					Lus10018421 [exp]	8.2	0.9718
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10021088 [exp]	8.4	0.9657
AT1G01290		CNX3	cofactor of nitrate reductase ...		Lus10036661 [exp]	8.8	0.9377
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	9.6	0.9734
					Lus10011653 [exp]	9.9	0.9637
					Lus10002596 [exp]	10.0	0.9709
AT3G48660			Protein of unknown function (D...		Lus10003120 [exp]	11.8	0.9684

Compare expression of checked genes

Lus10042453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.