Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80690 261 / 5e-88 PPPDE putative thiol peptidase family protein (.1) AT5G25170 239 / 2e-79 PPPDE putative thiol peptidase family protein (.1) AT2G25190 226 / 3e-74 PPPDE putative thiol peptidase family protein (.1) AT1G47740 213 / 2e-68 PPPDE putative thiol peptidase family protein (.1.2) AT4G31980 221 / 2e-67 unknown protein AT4G17486 194 / 9e-62 PPPDE putative thiol peptidase family protein (.1.2) AT5G47310 189 / 1e-59 PPPDE putative thiol peptidase family protein (.1) AT4G25660 86 / 1e-19 PPPDE putative thiol peptidase family protein (.1) AT4G25680 85 / 1e-19 PPPDE putative thiol peptidase family protein (.1) AT3G07090 51 / 2e-07 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026215 [exp] 414 / 7e-148 AT1G80690 265 / 8e-90 PPPDE putative thiol peptidase family protein (.1) Lus10018326 [exp] 246 / 2e-82 AT5G25170 314 / 3e-110 PPPDE putative thiol peptidase family protein (.1) Lus10017127 [exp] 245 / 4e-82 AT5G25170 312 / 3e-109 PPPDE putative thiol peptidase family protein (.1) Lus10005341 [exp] 238 / 3e-79 AT5G25170 303 / 9e-106 PPPDE putative thiol peptidase family protein (.1) Lus10041021 [exp] 234 / 1e-77 AT5G25170 309 / 5e-108 PPPDE putative thiol peptidase family protein (.1) Lus10032708 [exp] 206 / 4e-66 AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2) Lus10003951 [exp] 202 / 7e-65 AT1G47740 358 / 8e-126 PPPDE putative thiol peptidase family protein (.1.2) Lus10004755 [exp] 200 / 3e-64 AT4G17486 273 / 2e-93 PPPDE putative thiol peptidase family protein (.1.2) Lus10007844 [exp] 199 / 5e-64 AT4G17486 277 / 3e-95 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G180400 [exp] 266 / 2e-90 AT1G80690 303 / 1e-105 PPPDE putative thiol peptidase family protein (.1) Potri.001G047800 [exp] 265 / 6e-90 AT1G80690 298 / 2e-103 PPPDE putative thiol peptidase family protein (.1) Potri.006G261500 [exp] 244 / 2e-81 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.018G021700 [exp] 243 / 4e-81 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.014G042300 [exp] 216 / 4e-70 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.004G151200 [exp] 216 / 4e-70 AT1G47740 335 / 1e-116 PPPDE putative thiol peptidase family protein (.1.2) Potri.002G134200 [exp] 214 / 2e-69 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 210 / 6e-68 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 209 / 1e-67 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.003G080300 [exp] 199 / 1e-63 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10042454 pacid=23153905 polypeptide=Lus10042454 locus=Lus10042454.g ID=Lus10042454.BGIv1.0 annot-version=v1.0 ATGTTCTGTGGGAAAAGCTTTTCAAGGTCAGGAGAAACTAAGAAGGGATCAGTCCCAGTGTTCCTCAATGTATATGACCTCACTCCCATTAATGGCTACG CTTACTGGGTTGGTCTCGGAGTTTATCATTCTGGTGTTCAAGTTCACAACGTGGAGTATGCGTTTGGGGCACACGAGTACCCAACGACTGGGATATTTGA AGGCGTGCCAAAGCAATGCGAGGGCTTCACATTCCGCAAGTCAATTCTGATAGGGAAGACTGAGTTGGGTCCATGTGAGGTCAGGAAAGTGATGGAGGAT TTGGCTCATGAATACAAAGGCAATGCTTACAATTTGATTACCAAGAACTGCAACCATTTCTGCAATGCTGCTTGCCTTAAACTCACTTCCAACCCCATCC CTAGCTGGGTCAACCGCCTTGCCCGAATCGGATTTCTATGCAATTGTGTGCTTCCTTCGCATATATGTTCGACCAAAGTTCGGCATGATAGCAGCAGGCC TGAGGAGGATGCCAAGCTGTCTTGTGATGTTGTAATAGTGGACAAGAGTTTGAGAGACGGTGGAACTTATCATGATGATGAGTTCACTACTACTCCCTCT TCTAAAACTTGCTCGTCTACATCATCTTCTCCCTCTAGTGCTACTACAACTGCCATAACAAGTGGCAATGATGATGAGAATGATCATCAAGTTCGAGGGA GGAGTAGAACTAGGAGACGACGTCGTGGCGATATCCCCCCTTGTTCCCCTTTGATTACCTCTTCTTCATCACCCTCAGCTGCATCATGA
AA sequence Show only first row Show all	>Lus10042454 pacid=23153905 polypeptide=Lus10042454 locus=Lus10042454.g ID=Lus10042454.BGIv1.0 annot-version=v1.0 MFCGKSFSRSGETKKGSVPVFLNVYDLTPINGYAYWVGLGVYHSGVQVHNVEYAFGAHEYPTTGIFEGVPKQCEGFTFRKSILIGKTELGPCEVRKVMED LAHEYKGNAYNLITKNCNHFCNAACLKLTSNPIPSWVNRLARIGFLCNCVLPSHICSTKVRHDSSRPEEDAKLSCDVVIVDKSLRDGGTYHDDEFTTTPS SKTCSSTSSSPSSATTTAITSGNDDENDHQVRGRSRTRRRRRGDIPPCSPLITSSSSPSAAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80690			PPPDE putative thiol peptidase...		Lus10042454 [exp]	0	1
AT2G26680			unknown protein		Lus10019418 [exp]	2.0	0.8994
AT1G16860			Ubiquitin-specific protease fa...		Lus10034825 [exp]	2.4	0.9017
AT5G58300			Leucine-rich repeat protein ki...		Lus10019113 [exp]	2.6	0.8674
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10026495 [exp]	6.3	0.8669
AT2G26680			unknown protein		Lus10043275 [exp]	6.3	0.8797
AT1G78530			Protein kinase superfamily pro...		Lus10005569 [exp]	8.7	0.8490
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10027420 [exp]	9.5	0.8509
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	10.8	0.8830
AT1G30630			Coatomer epsilon subunit (.1)		Lus10003497 [exp]	15.0	0.8377
AT2G14835			RING/U-box superfamily protein...		Lus10002131 [exp]	15.2	0.8607

Compare expression of checked genes

Lus10042454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.