Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13670 1109 / 0 Protein kinase family protein (.1) AT2G25760 1022 / 0 Protein kinase family protein (.1.2) AT5G18190 1008 / 0 Protein kinase family protein (.1) AT3G03940 1006 / 0 Protein kinase family protein (.1) AT3G03930 377 / 1e-126 protein kinase-related (.1) AT1G03930 202 / 1e-57 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT3G23340 200 / 4e-57 CKL10 casein kinase I-like 10 (.1) AT4G28860 199 / 4e-57 CKL4 casein kinase I-like 4 (.1.2) AT4G28540 201 / 6e-57 CKL6, PAPK1 casein kinase I-like 6 (.1) AT5G44100 201 / 8e-57 CKL7 casein kinase I-like 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026214 [exp] 1320 / 0 AT3G13670 1085 / 0.0 Protein kinase family protein (.1) Lus10039203 [exp] 1246 / 0 AT3G13670 1132 / 0.0 Protein kinase family protein (.1) Lus10013737 [exp] 1080 / 0 AT3G13670 979 / 0.0 Protein kinase family protein (.1) Lus10005479 [exp] 1031 / 0 AT2G25760 1093 / 0.0 Protein kinase family protein (.1.2) Lus10025827 [exp] 971 / 0 AT2G25760 1030 / 0.0 Protein kinase family protein (.1.2) Lus10014152 [exp] 942 / 0 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2) Lus10037565 [exp] 932 / 0 AT2G25760 977 / 0.0 Protein kinase family protein (.1.2) Lus10024261 [exp] 928 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10023628 [exp] 914 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G009700 [exp] 1160 / 0 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.003G215700 [exp] 1158 / 0 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.018G046400 [exp] 1048 / 0 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.006G236600 [exp] 1041 / 0 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2) Potri.019G034500 [exp] 1018 / 0 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.001G189100 [exp] 1000 / 0 AT2G25760 1051 / 0.0 Protein kinase family protein (.1.2) Potri.003G049700 [exp] 977 / 0 AT2G25760 1041 / 0.0 Protein kinase family protein (.1.2) Potri.013G047200 [exp] 203 / 8e-58 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.018G065900 [exp] 203 / 1e-57 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.005G226900 [exp] 202 / 2e-57 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042455 pacid=23153550 polypeptide=Lus10042455 locus=Lus10042455.g ID=Lus10042455.BGIv1.0 annot-version=v1.0 ATGCCTGAGCTCCGTCGTAGAGGTGTACGCAGAGGTCGCGCAGGGTTAGCGCCTCAAAACATACAATCGGACCCTGCCGCCGGGCAGGATTGTGTCAAGA CTCGCCGCGTCGCCGTTTCCGGAGAGGCTAAGAGGCCAAGGACGCGATTGGAGGCAAAGCGCTTGAAGGAGAAAGAAGAAGAAGAGAATCAAAGGGAGCT TGACGGTGATAAGGTGGTTGTGATATCTGATAGAGAAGAGAGCGGAGGACAAGGGAAAGCCCATAATTTGATTCCCGCTGTTGACCTTGAAGCAAGACAA CAGATTGAAAAAGTTGGTGAAATGGGTGATGAAAGTGGTGGTCTGAGTGCTAATAATGCTGCTGGACAGGAGGAAGAAGGGACTACTGCCCCATTCCCAG AAAGGGTTCAAGTGGGGGGATCACCAATGTACAAGATAGAAAGGAAGTTGGGCAAAGGTGGCTTCGGTCAAGTGTTTGTTGGACGTCGTCTTAGTGGTGG AACTGATGGGATGGGAGCTGGTGCAACGGAGGTGGCTGTGAAATTTGAACATAGAAACAGTAAAGGCTGTAACTATGGCCCCCCTTATGAATGGCAAGTT TACAACACTCTTGGTGGTAGCTATGGGGTGCCAAAAGTGCATTTCAAAGGAAGGCATGGAGATTATTACGTAATGGTTATGGATATGCTAGGGCCAAGCC TGTGGGATGTTTGGAATTCTTCTGGGCAAGCGATGTCTGCGGAAATGGTGTCCTGTATAGCTGTTGAGGCTCTTACCATCCTAGACAAAATGCACTCACG AGGTTATGTGCATGGAGATGTAAAACCAGAAAATTTCTTACTTGGTCAGCCTGGGACATCACAGGAGAAAAAGCTGTATCTTGTGGACCTGGGATTAGCG ACAAAATGGAGGGATAGTAGCAGTGGCGAGCATGTTGAATATGACCAACGTCCTGATATGTTTAGGGGTACTGTGCGATATGCTAGCGTTCATGCTCACC TGGGAAGGACTGCCAGCCGGAGAGATGACCTTGAATCCCTGGCTTACACACTTATCTTCTTACATCGAGGCAGATTGCCATGGCAAGGCTATCAGGGTGA CAACAAGTCCTTCCTAGTTTGCAAAAAGAAAATGGCAACATCCCCAGAAATGCTGTGCTGCTTTTGTCCTCAACCGCTGAAACAATTTCTTGAGTTTGTG GTCAATTTGAAATTTGACGAGGAACCAAACTATTCTAAGCTTATATCTTTATTTGAGGGCTTGTTGGGGCCAAACCCAGCTATAAGGCCTTTAAATACCG AGGGTGCTCAAAAGATCATCTCTCAAGTTGGTCAGAAACGTGGTAGGTTAAATATTGAGGAAGATGACGGGCAACCACGGAAGAAGGTTCGCCTTGGAGT TCCTGCTATGCAATGGATCTCAATTTATAATGCCAGGCGACCGATGAAACAGAGGTACCACTACAATGTCGCGGATGGAAGGTTGGCACAACATGTGGAG AGAGGAACTGCTGATGGTCTTCTGATAAGTTGTGTGGCATCATGTTCCAATCTTTGGGCATTGATCATGGATGCTGGAACTGGCTTTTCTAGTCAAGTAT ATGAACTGTCCCCCTTTTTTTTGCATAAGGAGTGGATAATGGAACAATGGGAGAAGAACTACTACATTAGTTCAGTTGCTGGTGCAAATAACGGAAGCTC ACTTGTGGTCATGTCCAAAGGCACCCAATACACTCAACAATCGTACAAGGTGAGCGATTCATTTCCATTTAAGTGGATCAACAAGAAGTGGAAAGAAGGA TTTCATGTGACCTCAATGGCCACCGCTGGGTCCCGGTGGGGAATTGTCATGTCTCGCAATGCTGGGTTCAGTGATCAGGTTGTGGAGCTTGATTTTCTCT ATCCAAGTGAAGGCATTCACCGACGGTGGGATGGTGGCTTCAGAATCACATCAACAGCAGCAACATCTGATCAAACCGCTCTTATCTTGAGTGTTCCGAG GCGCAGACCTAATGACGAAACTCAAGAGACTTTGCGTACATCTCAGTTTCCAAGTACACATGTGAAGGAAAAATGGTCCAAGAACCTCTACCTAGCATGT CTCTGTTATGGGAGGACGGTCTCATGA
AA sequence Show only first row Show all	>Lus10042455 pacid=23153550 polypeptide=Lus10042455 locus=Lus10042455.g ID=Lus10042455.BGIv1.0 annot-version=v1.0 MPELRRRGVRRGRAGLAPQNIQSDPAAGQDCVKTRRVAVSGEAKRPRTRLEAKRLKEKEEEENQRELDGDKVVVISDREESGGQGKAHNLIPAVDLEARQ QIEKVGEMGDESGGLSANNAAGQEEEGTTAPFPERVQVGGSPMYKIERKLGKGGFGQVFVGRRLSGGTDGMGAGATEVAVKFEHRNSKGCNYGPPYEWQV YNTLGGSYGVPKVHFKGRHGDYYVMVMDMLGPSLWDVWNSSGQAMSAEMVSCIAVEALTILDKMHSRGYVHGDVKPENFLLGQPGTSQEKKLYLVDLGLA TKWRDSSSGEHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGYQGDNKSFLVCKKKMATSPEMLCCFCPQPLKQFLEFV VNLKFDEEPNYSKLISLFEGLLGPNPAIRPLNTEGAQKIISQVGQKRGRLNIEEDDGQPRKKVRLGVPAMQWISIYNARRPMKQRYHYNVADGRLAQHVE RGTADGLLISCVASCSNLWALIMDAGTGFSSQVYELSPFFLHKEWIMEQWEKNYYISSVAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWKEG FHVTSMATAGSRWGIVMSRNAGFSDQVVELDFLYPSEGIHRRWDGGFRITSTAATSDQTALILSVPRRRPNDETQETLRTSQFPSTHVKEKWSKNLYLAC LCYGRTVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13670			Protein kinase family protein ...		Lus10042455 [exp]	0	1
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10040921 [exp]	1.4	0.8520
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031223 [exp]	1.4	0.8734
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031799 [exp]	3.0	0.8518
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	3.5	0.8418
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10036915 [exp]	5.4	0.7797
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Lus10039566 [exp]	5.7	0.8200
AT5G18420			unknown protein		Lus10027578 [exp]	6.0	0.8002
AT3G27260		GTE8	global transcription factor gr...		Lus10014609 [exp]	9.5	0.8320
AT2G34670			Protein of unknown function (D...		Lus10036155 [exp]	9.9	0.8214
AT1G02270			Calcium-binding endonuclease/e...		Lus10005145 [exp]	10.3	0.7530

Compare expression of checked genes

Lus10042455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.