Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05610 452 / 5e-156 APS2 ADP-glucose pyrophosphorylase small subunit 2 (.1) AT5G48300 348 / 2e-114 APS1, ADG1 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) AT5G19220 288 / 3e-91 ADG2, APL1 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) AT1G27680 282 / 6e-89 APL2 ADPGLC-PPase large subunit (.1) AT4G39210 274 / 6e-86 APL3 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G21590 268 / 2e-83 APL4 Glucose-1-phosphate adenylyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026213 [exp] 718 / 0 AT1G05610 437 / 1e-150 ADP-glucose pyrophosphorylase small subunit 2 (.1) Lus10025187 [exp] 349 / 8e-115 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10016069 [exp] 348 / 2e-114 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10034053 [exp] 277 / 8e-87 AT5G19220 832 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10007209 [exp] 274 / 9e-86 AT1G27680 715 / 0.0 ADPGLC-PPase large subunit (.1) Lus10023553 [exp] 273 / 1e-85 AT4G39210 730 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10010515 [exp] 265 / 6e-82 AT5G19220 827 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10010088 [exp] 260 / 2e-80 AT1G27680 697 / 0.0 ADPGLC-PPase large subunit (.1) Lus10040437 [exp] 251 / 4e-77 AT4G39210 697 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001700 [exp] 507 / 2e-176 AT1G05610 532 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1) Potri.007G146100 [exp] 489 / 4e-170 AT1G05610 529 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1) Potri.014G171800 [exp] 347 / 3e-114 AT5G48300 885 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Potri.008G195100 [exp] 280 / 3e-88 AT5G19220 801 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Potri.014G110000 [exp] 276 / 2e-86 AT1G27680 737 / 0.0 ADPGLC-PPase large subunit (.1) Potri.002G033400 [exp] 274 / 9e-86 AT1G27680 822 / 0.0 ADPGLC-PPase large subunit (.1) Potri.009G118800 [exp] 273 / 1e-85 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.004G157100 [exp] 271 / 6e-85 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.005G229700 [exp] 271 / 9e-85 AT1G27680 810 / 0.0 ADPGLC-PPase large subunit (.1) Potri.006G090300 [exp] 42 / 0.0007 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Lus10042456 pacid=23153483 polypeptide=Lus10042456 locus=Lus10042456.g ID=Lus10042456.BGIv1.0 annot-version=v1.0 ATGGTGATGGCATTTCACCTCTCCTCTGCTTGTTCACTCTCGATTCTCCATCCAAAGCACCTCCATACTTGTTATGATGTTACAAAACCATCATCATTAC TTACTCGTAACGGCTCGCGAATTACATCACGCTTATCGTCATTGTACATATCAAACTCCCATAGTAATCCACATTACCACACCTCACCACCCCACTTGCC ACCACTGGACCAGAGTGTTGCCGCGGTTGTGTTTGGGGACAGATCGTTGGACTCGACGAGGCTGTACCCTCTGACCGTTAGGAGATCGGAGTCAGCCATC CCAATTGCGGCAAACTACAGGCTGATAGATGTAGTGGTAAGCAACTGCATAAACAGCAACATCAACAAGATCTATGTCCTCACCCAATTCAACTCCACTT CCCTCAATTCCCACCTTGTCAAGGCCTACTCTGGAGTAGGCCTTGGCCACAGTGGTGGGTTTGTGGAAGTCGTTGCGGCTTACCAGAGCCTTGAACACCA AGGCTGGTTTCAGGGCAGTGCTGATGCTATAAGAAGATGCTTGTGGGTAATGGAGGAGTATCCAGTCACTGAATTCCTGATACTTCCTGGACACCATCTC TACAGGATGGACTACAGAAAACTCATAGAGGCTCATCGAAACAGCAATGCTGATATAACAATTGCTGCAGCATCATCGAGTAATTCTTCAACAAGTACTG GTGATGATGCGCTTGGCCAATTGGAGGTGGACTCACATAATCAAGTTACTGCTTTCCATGCTCATTCTGTGAGAAACCCACAAGAGAGGAAGTCCAGAAA GTGGAATGGCATACCCAAAACTGGGAGTGGAATGTTTAGAAACATGGGGATATACGTGATCAATAGGGAGATGCTGAAGAAACTTTTGAATGAAAGTTTT CCAGAGGCATTGGACTTGGGAAGTGAAGTGATAAAGGGATCCATATCCACTGGACTAAAGGTACAAGCTTATGTATTCAATGGGTTTTGGGAGGATATGG GGAGCATAGCAGCATTTTACAGAGCCAATTTGGAATGCATCAACACATCAAACACTTGTTATGGTTTCTACGAGATGGGGTCACCACTGTACGGCATCCC AAGGTGTCTACCCCCGACGACAGTGAGCGGTGCTGTGATTACAGAGAGTGTAATTGGAGATGGTTGCATCATCAATAAGTGCAGAATCAAAGGGAGCGTG GTGGGAATGAGGAGCAGGATCGGGGATAGAGCTGTCATTGAAGATTCAGTCATCTTGGGCTCTGATATCTATCACGAGTATGATAAGAATATTGGAGGAG TAGAGGAGAGGAGCTTTGATGTTCCAATTGGGATAGGAGATGGCACTCTGCTCAGGAAAGCAGTTGTTGACAAGAATGCAAGAATTGGCAGAAATGTCAA GATAATAAACAAGAACATGGTAGAAGAAGCCAACAGAGAGAGTGAAGGGTACGTTATCAGAGATGGGATCATTGTCATTTTGCGAGGGGCTCAGATACTT GACGGTGTTGTTTTGTGA
AA sequence Show only first row Show all	>Lus10042456 pacid=23153483 polypeptide=Lus10042456 locus=Lus10042456.g ID=Lus10042456.BGIv1.0 annot-version=v1.0 MVMAFHLSSACSLSILHPKHLHTCYDVTKPSSLLTRNGSRITSRLSSLYISNSHSNPHYHTSPPHLPPLDQSVAAVVFGDRSLDSTRLYPLTVRRSESAI PIAANYRLIDVVVSNCINSNINKIYVLTQFNSTSLNSHLVKAYSGVGLGHSGGFVEVVAAYQSLEHQGWFQGSADAIRRCLWVMEEYPVTEFLILPGHHL YRMDYRKLIEAHRNSNADITIAAASSSNSSTSTGDDALGQLEVDSHNQVTAFHAHSVRNPQERKSRKWNGIPKTGSGMFRNMGIYVINREMLKKLLNESF PEALDLGSEVIKGSISTGLKVQAYVFNGFWEDMGSIAAFYRANLECINTSNTCYGFYEMGSPLYGIPRCLPPTTVSGAVITESVIGDGCIINKCRIKGSV VGMRSRIGDRAVIEDSVILGSDIYHEYDKNIGGVEERSFDVPIGIGDGTLLRKAVVDKNARIGRNVKIINKNMVEEANRESEGYVIRDGIIVILRGAQIL DGVVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10042456 [exp]	0	1
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10041979 [exp]	1.0	0.9593
AT5G36930			Disease resistance protein (TI...		Lus10007808 [exp]	1.4	0.9521
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10026213 [exp]	3.2	0.9404
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Lus10042284 [exp]	3.5	0.9470
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Lus10026373 [exp]	5.3	0.9164
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Lus10042397 [exp]	6.0	0.9503
AT5G67550			unknown protein		Lus10011544 [exp]	6.0	0.9491
AT1G14730			Cytochrome b561/ferric reducta...		Lus10031935 [exp]	8.4	0.9469
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10011158 [exp]	8.4	0.9482
AT3G05620			Plant invertase/pectin methyle...		Lus10020677 [exp]	8.5	0.9424

Compare expression of checked genes

Lus10042456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.