Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73240 425 / 6e-144 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026211 [exp] 284 / 2e-92 AT1G73240 184 / 2e-54 unknown protein Lus10026209 [exp] 268 / 1e-87 AT1G73240 157 / 7e-46 unknown protein Lus10026210 [exp] 265 / 5e-87 AT1G73240 149 / 2e-43 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G013300 [exp] 551 / 0 AT1G73240 464 / 1e-159 unknown protein Potri.003G213050 [exp] 321 / 6e-107 AT1G73240 276 / 4e-90 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09531 [flax] [poplar] Ndc1_Nup Nucleoporin protein Ndc1-Nup
Representative CDS sequence Show only first row Show all	>Lus10042457 pacid=23153659 polypeptide=Lus10042457 locus=Lus10042457.g ID=Lus10042457.BGIv1.0 annot-version=v1.0 ATGCCTCTTCCTTCTTCCCCTCCACCGCCGGAGGTGGTGGTGAAGACCCGACATCTCGGGTTCTTGATATGGCAATCCATCTCTTCCACCGCCATTTTCC TTTTCTTCAAAATCCTTCTCTCTACTCTCCCCTCCTCTCCTTCTTCATCTTCACCTTTCTCCGCTCAGTCGATCTTCGTTTCGATCCTCTCCTTTCTATC CTTCCATCTATCCCAGCTTCTTATCTCCATCTCACTCTCAGCTGTTTCCTCACCTGAACCCGTTCCCCCAGCTACTCTTCTTCAGGTAGTCAGCGCCCTT CTCCGTCTGCTTTTCGTCTCCGGAGATTCCTTCTCCTCCGCTGAACTCCGTCGCCGGGCCAAAGTATCCTTGAACCTTGCGGCATTGGTCGTGGCTGCGG TATTTTCGGGAGTTTTGTCGTCGTTGTCCCTATTTGGGGGGAGGGTGGGTTACGGTGAGGTCCAGGCGATTGCGAGAGTAGGGTTTAGGGGGTTGGTGGT TGGACTGCTTTATGCTTTTAGATTTGTTTACAGACGTCGTTGGGTTCTTGAATTCCCCATTATTCAGCGTCCTCCGTTCTTCAGCTACAAGATGGGGATT CCTTCAGCTACTAAAAGAGCTGTGAGGCTTTCCACTACTGCCTACGTGCTCTCATCTGCATTGTTGATGTTTCTTCCCGCTGGCAGTGGCTCAACGATGA CTCTGTTCCTTCTCGATCAGATTGCTATTTACATGGGGATTTTCTGTATGGTTCTTTGTTGGGAGACAAGTCAGCATTTGTATCAGGTGCTACATACAAA AAGGTTCATATTTGCCCCGCCAAAAGGTTCAGCTGCTGCAGAAACAAATCCAACTGAACCGCTTATTGCAGCCCTGGAAGAAACTGCCTCTGATTCTCTT CCACGGTATCTTGCTTATCTCGACCTTTGCATGGTCTGTGAAAACAATGTTGACATCTGGAGGAGAGCTGCATTTTTTGAAGAAACTGGTGAGATATACA GAAAAGTAACAGCCGTGAGCTTGAAGCCATTGGAAGAGCTTGCTTCTAAGTTATGTGAAGGTTTGGAAGGTAGTTCTGCTGACATGGAGTACCAACTATC CAAACAGTTGCAATCAGCTACAGATCCACAACTACCTTCAAGTAGTTATGAACCACTGAACAACTTTCAGAAATTATCGTGGTGTGCAAGGGCTGTTTCT TCACTGACGGCACACTCACACGAGGAGGACCGATATGGAGTTGCTCAGCTCTCCGGTAGCATTGCCGCAACAGTGTCAACTCTCTTGTCTTGCCTGCTAG CTGTTGAAGCATTCATGGGTAAGAAGACGCATTTGCAATCTCCTAATCAGATGCTCGGACCAGCTGGTATTAGATGGGCTCCCTTGAACACTGGGAAACG AGATGTCCCAATTACCAAAAGGAGAGCTGGTCCTCTACACTCAAAGGCATATGCCATTGTTGATGTTCTAAGGACTTCAATATACTGCATTGCCTCTACT TTCCACAAGGAGATGGCTGCTAGCGCAAAAGCAGGCCTTCTCGAAAAGGACTGGATCACAGATACCAAGCCTTTGTATGGAACAAAGGAGTTGCTGGTGC AAAAGCTTAACCTCTTCCTGGATTATCGTGCTACTTAG
AA sequence Show only first row Show all	>Lus10042457 pacid=23153659 polypeptide=Lus10042457 locus=Lus10042457.g ID=Lus10042457.BGIv1.0 annot-version=v1.0 MPLPSSPPPPEVVVKTRHLGFLIWQSISSTAIFLFFKILLSTLPSSPSSSSPFSAQSIFVSILSFLSFHLSQLLISISLSAVSSPEPVPPATLLQVVSAL LRLLFVSGDSFSSAELRRRAKVSLNLAALVVAAVFSGVLSSLSLFGGRVGYGEVQAIARVGFRGLVVGLLYAFRFVYRRRWVLEFPIIQRPPFFSYKMGI PSATKRAVRLSTTAYVLSSALLMFLPAGSGSTMTLFLLDQIAIYMGIFCMVLCWETSQHLYQVLHTKRFIFAPPKGSAAAETNPTEPLIAALEETASDSL PRYLAYLDLCMVCENNVDIWRRAAFFEETGEIYRKVTAVSLKPLEELASKLCEGLEGSSADMEYQLSKQLQSATDPQLPSSSYEPLNNFQKLSWCARAVS SLTAHSHEEDRYGVAQLSGSIAATVSTLLSCLLAVEAFMGKKTHLQSPNQMLGPAGIRWAPLNTGKRDVPITKRRAGPLHSKAYAIVDVLRTSIYCIAST FHKEMAASAKAGLLEKDWITDTKPLYGTKELLVQKLNLFLDYRAT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73240			unknown protein		Lus10042457 [exp]	0	1
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019903 [exp]	3.7	0.9323
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10010919 [exp]	4.2	0.9318
AT4G23950			Galactose-binding protein (.1....		Lus10032405 [exp]	5.3	0.8743
AT3G60900		FLA10	FASCICLIN-like arabinogalactan...		Lus10038005 [exp]	7.7	0.8906
AT5G55610			unknown protein		Lus10004412 [exp]	9.4	0.9099
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10001797 [exp]	9.9	0.8956
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10026039 [exp]	10.7	0.9148
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10038004 [exp]	12.3	0.8960
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10024704 [exp]	16.8	0.8986
AT5G14580			polyribonucleotide nucleotidyl...		Lus10008763 [exp]	22.6	0.8879

Compare expression of checked genes

Lus10042457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.