Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80080 466 / 6e-163 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) AT4G28560 181 / 7e-53 RIC7 ROP-interactive CRIB motif-containing protein 7 (.1) AT3G25670 175 / 3e-50 Leucine-rich repeat (LRR) family protein (.1) AT1G68780 174 / 5e-50 RNI-like superfamily protein (.1) AT2G42800 171 / 1e-48 AtRLP29 receptor like protein 29 (.1) AT1G13230 166 / 3e-47 Leucine-rich repeat (LRR) family protein (.1) AT1G35710 156 / 1e-41 Protein kinase family protein with leucine-rich repeat domain (.1) AT3G56370 152 / 2e-40 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 142 / 5e-37 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G49660 141 / 1e-36 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026208 [exp] 701 / 0 AT1G80080 500 / 2e-175 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10010946 [exp] 211 / 5e-64 AT2G42800 459 / 2e-159 receptor like protein 29 (.1) Lus10031383 [exp] 210 / 2e-62 AT2G42800 446 / 1e-152 receptor like protein 29 (.1) Lus10034261 [exp] 189 / 1e-55 AT1G13230 460 / 6e-161 Leucine-rich repeat (LRR) family protein (.1) Lus10034384 [exp] 179 / 3e-52 AT1G13230 455 / 5e-159 Leucine-rich repeat (LRR) family protein (.1) Lus10038948 [exp] 172 / 1e-49 AT1G68780 404 / 2e-138 RNI-like superfamily protein (.1) Lus10027239 [exp] 172 / 2e-49 AT3G25670 402 / 6e-138 Leucine-rich repeat (LRR) family protein (.1) Lus10003624 [exp] 152 / 9e-42 AT4G28560 441 / 2e-152 ROP-interactive CRIB motif-containing protein 7 (.1) Lus10002293 [exp] 142 / 9e-37 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G202100 [exp] 536 / 0 AT1G80080 597 / 0.0 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Potri.008G211800 [exp] 192 / 5e-57 AT2G42800 474 / 7e-166 receptor like protein 29 (.1) Potri.008G114700 [exp] 186 / 2e-54 AT1G68780 387 / 2e-131 RNI-like superfamily protein (.1) Potri.005G227600 [exp] 182 / 5e-53 AT4G28560 444 / 2e-153 ROP-interactive CRIB motif-containing protein 7 (.1) Potri.015G132200 [exp] 149 / 2e-39 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.012G027600 [exp] 147 / 2e-38 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.002G008175 [exp] 146 / 2e-38 AT4G08850 566 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008375 [exp] 145 / 7e-38 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G025500 [exp] 145 / 8e-38 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G120733 [exp] 144 / 1e-37 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10042458 pacid=23153656 polypeptide=Lus10042458 locus=Lus10042458.g ID=Lus10042458.BGIv1.0 annot-version=v1.0 ATGAAAGCAACCGGCAACGACTGGGCGACCGACATCCCCGACGTCTGCCGCGGTAGGTGGCACGGCATCGAGTGCGTCCTCGACAAGGATAACGTCTTCC ACGTCATCTCCTTATCTTTCGGAGCATTGTCCGACGAAACCGCTTTCCCAACTTGCGAACCAACCGCCAACTCAACTATTTCTCCTTCCGTCACCAAGCT CCCCCATCTCCGGACCCTCTTCTTTTACCGTTGTCTGACCCACAACCCGCAACCCGTGCCCCGGTTTCTTGCCCGACTGGCTCCCACTTTGCAAACCTTG ATCCTCCGAGAAAACGGACACGTGGGTCCCATCCCTGACGAGCTGGGGAATCTCGGCAGGCTCAGGGTGCTTGATCTCCACAGAAATAATCTCAACGGTT CCATACCGAGCGGGTTGGGTCGATTGGACGGGTTGAAGTCGTTGGACCTGAGTGGGAATAAATTGACCGGTTCGATACCCAGCGTTAGATTTTCGTCGTT GAATGTGCTGGACTTGAGTCAAAATTTGCTCAAGGGTTCAATCCCGCCGAGCATTTGCTCCAGCCGCCGGCTGATCAAACTGGATATCAGCCGTAATCGA CTCACCGGGGTTATTCCGAAAGCGATCGGCGGGTTGAAGGAGGTCATCCTCATGGATTTTAGCTACAACAGCATGTCCGGGCCGCTTCCGGCGACCGTCA GAGGGTTAACATCTCTCCAGGCGTTGATTCTCAAGGGCAATCCAGTGTGGTCAGCCGCTCTTTCAAGCAATCAATTTGAAGGGATGAAAAGGCTGGAAGT ACTAGTGATGTCGAACATGAACTTGACCGGTTCGATTCCGGAGTCACTGGGCAGGTTGAGAAACCTGAGGGTGGTTCACCTGGAGGGAAACAAACTCAAG GGTCCAATCCCGAAAAGTTTAGGGGATTTGAAAAACGTGTCGGAGTTGAGGCTAAACGACAACGAACTGACGGGAGCGGTGCCGTTTGGTAGGGAGATGG TTTGGAGGATGAGAAGGAAACTGAGGCTTCACAACAACTTGGGGCTTTGCTATGAAGGTGGCAGTGGGTTAGGCGAAGAAGACGATCCTGCTTCCGCTTC TTTTTCAGATTTGGGAATCGGCTTGTGTTACCATAACAGATGA
AA sequence Show only first row Show all	>Lus10042458 pacid=23153656 polypeptide=Lus10042458 locus=Lus10042458.g ID=Lus10042458.BGIv1.0 annot-version=v1.0 MKATGNDWATDIPDVCRGRWHGIECVLDKDNVFHVISLSFGALSDETAFPTCEPTANSTISPSVTKLPHLRTLFFYRCLTHNPQPVPRFLARLAPTLQTL ILRENGHVGPIPDELGNLGRLRVLDLHRNNLNGSIPSGLGRLDGLKSLDLSGNKLTGSIPSVRFSSLNVLDLSQNLLKGSIPPSICSSRRLIKLDISRNR LTGVIPKAIGGLKEVILMDFSYNSMSGPLPATVRGLTSLQALILKGNPVWSAALSSNQFEGMKRLEVLVMSNMNLTGSIPESLGRLRNLRVVHLEGNKLK GPIPKSLGDLKNVSELRLNDNELTGAVPFGREMVWRMRRKLRLHNNLGLCYEGGSGLGEEDDPASASFSDLGIGLCYHNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10042458 [exp]	0	1
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10002587 [exp]	1.0	0.9550
					Lus10006808 [exp]	1.4	0.9402
AT1G55800			Domain of unknown function (DU...		Lus10016346 [exp]	1.7	0.9210
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10026208 [exp]	2.2	0.9129
AT5G60880		BASL	breaking of asymmetry in the s...		Lus10034654 [exp]	2.8	0.9163
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10039328 [exp]	4.9	0.8976
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10017350 [exp]	5.5	0.8693
AT3G10080			RmlC-like cupins superfamily p...		Lus10020631 [exp]	5.9	0.8907
AT1G17630			Pentatricopeptide repeat (PPR-...		Lus10002512 [exp]	7.2	0.8182
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10002524 [exp]	9.4	0.8793

Compare expression of checked genes

Lus10042458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.