Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51130 305 / 7e-101 Nse4, component of Smc5/6 DNA repair complex (.1) AT3G20760 260 / 1e-83 Nse4, component of Smc5/6 DNA repair complex (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039205 [exp] 408 / 7e-141 AT1G51130 369 / 1e-125 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10013735 [exp] 404 / 3e-139 AT1G51130 368 / 2e-125 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10021041 [exp] 95 / 1e-22 AT1G51130 108 / 6e-28 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10004185 [exp] 61 / 9e-11 AT3G20760 94 / 1e-22 Nse4, component of Smc5/6 DNA repair complex (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T028032 [exp] 332 / 2e-111 AT1G51130 395 / 3e-136 Nse4, component of Smc5/6 DNA repair complex (.1) Potri.003G212600 [exp] 332 / 2e-111 AT1G51130 394 / 9e-136 Nse4, component of Smc5/6 DNA repair complex (.1) Potri.016G046802 [exp] 278 / 2e-90 AT1G51130 361 / 7e-123 Nse4, component of Smc5/6 DNA repair complex (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08743 [flax] [poplar] Nse4_C Nse4 C-terminal
Representative CDS sequence Show only first row Show all	>Lus10042459 pacid=23153838 polypeptide=Lus10042459 locus=Lus10042459.g ID=Lus10042459.BGIv1.0 annot-version=v1.0 ATGATCAATGGGAAGCGGGAACGCGTCTTCACGACTAGCAGGAGCAACTGTGCCGTCGAACATGGCGGCAGTAGTAAGGACCGAGTTTTCAGGACTACAG CGGGTCGTCGAATCCAGCTTAACTCAGGCACAGACGATGAGCAGCAGATGGATCAATCAGTTGAGGAGCGGAGAGTTCTTCGTTCTAAGTATCGCGCCTT GCAGAATAGGATCAACGAGGAGAGTGATGATTTGACGAATGTGGACTCTGACAAGTTCGATTCATTCGTCAAAGAGGTTGATCATTTGCACCAATACGTT CAGACGCCAAGGGAACAGGTTGCTGATGCACAGACATTGTTGAGCTTAACTACCACGTTGCTTTCGTCTGTTAAGGCACAATCAAGGGATGACGGTGTTA CTCTAGGAGAGTTCGTTGCTAAGCTAAGAAATGCTTTCCAGGAATCCATAACTACAACATCAGCTGATCAAGAAAACTCCCCGCCAATTTCACTCAACTG GAAGGAGATTGGCCTTTTTGTTTCGCCAATATGCAGCAACTGCTGCTGTGGATTTAGCACCATGTTGGGGCCGATGGATACTGAGATGAAGCAAAGGAAG CAATATGCTCAAGGATCACGATCAAGGCCAGCACAATTTGACCGACCTAATGATGTTAATGATACTGGGGATGAAGAGAAAACAGATACTGACAAGAATA TGGCTACTATGTTTGGAATCTTGAATGGAATCTTGACGAGCAAGAAACGTGTCAGGCTTGAAAGTTTGATACTGAACAGAAGGTCTTTCGCTCAGACTGT GGAGAACCTGTTTGCACTTTCTTTCTTAGTGAAAGATGGAAGAGTTCAAATTGTAGTGGATGATAATAATACCCATTTCGTCATACCAAGGAACGCTCCA ACTGCTGATTCTGTCATGTCCAAGGACGTTTCATACACTCATTTTGTCTTCAGATTTGACTTTCGAGACTGGAAGTTGACGAAGGATAGAGTAGCCAATG GTGAGGAACTCATGCCCGATAGGGATCGTCCTGAAACTGCTTCTGTTACTGACAACACGAGCCCAGGTGCACAAACACGAACACCAATACGAAAATGGAC AAGGAACCGCAGGCTGATTGTGGGAAATGATACAGTTGAGGGGACTCGTGAAAGTGAAGGTACTGGTCCTAAGGCCAGTCGAGATCGCCGTTGCAAGCGT AGGCTCACATAA
AA sequence Show only first row Show all	>Lus10042459 pacid=23153838 polypeptide=Lus10042459 locus=Lus10042459.g ID=Lus10042459.BGIv1.0 annot-version=v1.0 MINGKRERVFTTSRSNCAVEHGGSSKDRVFRTTAGRRIQLNSGTDDEQQMDQSVEERRVLRSKYRALQNRINEESDDLTNVDSDKFDSFVKEVDHLHQYV QTPREQVADAQTLLSLTTTLLSSVKAQSRDDGVTLGEFVAKLRNAFQESITTTSADQENSPPISLNWKEIGLFVSPICSNCCCGFSTMLGPMDTEMKQRK QYAQGSRSRPAQFDRPNDVNDTGDEEKTDTDKNMATMFGILNGILTSKKRVRLESLILNRRSFAQTVENLFALSFLVKDGRVQIVVDDNNTHFVIPRNAP TADSVMSKDVSYTHFVFRFDFRDWKLTKDRVANGEELMPDRDRPETASVTDNTSPGAQTRTPIRKWTRNRRLIVGNDTVEGTRESEGTGPKASRDRRCKR RLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10042459 [exp]	0	1
AT5G51170			unknown protein		Lus10035151 [exp]	1.4	0.8885
AT1G49180			protein kinase family protein ...		Lus10033518 [exp]	5.3	0.8898
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10018609 [exp]	5.3	0.8634
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10015651 [exp]	6.6	0.8338
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10023743 [exp]	6.7	0.8525
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	6.9	0.8408
AT5G50310			Galactose oxidase/kelch repeat...		Lus10040895 [exp]	6.9	0.8374
AT5G12410			THUMP domain-containing protei...		Lus10005018 [exp]	8.9	0.8548
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Lus10008988 [exp]	9.2	0.8791
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10000360 [exp]	9.2	0.8835

Compare expression of checked genes

Lus10042459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.