Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16670 523 / 0 Protein kinase superfamily protein (.1) AT3G09010 352 / 2e-119 Protein kinase superfamily protein (.1) AT1G56130 365 / 2e-117 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 363 / 7e-117 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 357 / 3e-114 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 352 / 5e-113 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56145 347 / 5e-111 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 343 / 1e-109 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 343 / 4e-109 Leucine-rich repeat transmembrane protein kinase (.1) AT3G14840 341 / 1e-108 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026207 [exp] 672 / 0 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10028149 [exp] 427 / 3e-149 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10042851 [exp] 427 / 1e-148 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10026503 [exp] 372 / 4e-128 AT1G16670 369 / 2e-126 Protein kinase superfamily protein (.1) Lus10019933 [exp] 370 / 4e-127 AT1G16670 364 / 1e-124 Protein kinase superfamily protein (.1) Lus10011193 [exp] 354 / 1e-120 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1) Lus10031199 [exp] 371 / 1e-119 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10004825 [exp] 352 / 2e-119 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10018481 [exp] 352 / 8e-119 AT3G09010 414 / 7e-143 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G142100 [exp] 564 / 0 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 549 / 0 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 481 / 1e-170 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.001G393200 [exp] 478 / 4e-168 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 406 / 2e-141 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 380 / 4e-131 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.004G040200 [exp] 373 / 4e-128 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 370 / 6e-127 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.016G114800 [exp] 353 / 2e-120 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.007G067900 [exp] 370 / 1e-119 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042460 pacid=23153799 polypeptide=Lus10042460 locus=Lus10042460.g ID=Lus10042460.BGIv1.0 annot-version=v1.0 ATGGCAGAACTTGCTGGTGTTCACAATGTCAAAACGTATTCCTACAAGGAATTGAGAGAAGCTACTGATAATTTCAGCACTGCAAACAAAATTGGAGAGG GTGGTTTTGGCTCTGTCTACAAGGGACGTCTTAAAGATGGTAGACTAGTTGCTGTAAAACCTCTTTCGGCTGAATCAAGACAAGGGGTAGGCGAGTTCCT AGCCGAAATAAAAGCAATCTCAGAGGTCGAACATGAGAATTTGGTTAAGCTTTATGGCTGCTGCGTGGAAGGAAACCACAGAATTCTGGTCTACAATTAC CTGGAGAATAATAGCTTGGCCCAGACGCTTCTTGGTGGATCTCATAGTACTCTTCAGTTTGATTGGAGAACACGAACGAGAATAAGCATCGGAGTAGCGC GAGGGCTTGCCTTCCTTCATGAAGAAGTACGACCGTACATTGTGCATAGAGATATCAAAGCAAGCAACATTCTCTTGGACAAAGATCTAACACCCAAGAT TTCTGATTTTGGTCTGGCAAAGTTGATCCCATCACACATGACTCATGTTAGTACTCGGGTGGCTGGGACAATAGGGTATCTAGCACCAGAGTATGCAATT CGGGGACAGTTGACGCGGAGAGCAGACATATACAGTTTCGGAGTCCTGCTTGTGGAAATTGTCAGCGGAAGATGCAACACAAACACTCGATTGCCTGTTG AGGAGCAATATATCCTAGAACGGACATGGCAACTTTATGAGCGCAAGGAGCTCATAGCGCTGGTAGACACATCGCTAGAGGGCGATTTCGATCCGGAGGA GGCTTGTAGGTATTTGAAGATTGGCCTACTCTGCACCCAAGACTCTCCAAAGCTTCGCCCTTCTATGTCAACAGTGGTAAAGATGCTGAGTGGTGAGAAG GAGCTTGATGACACTATGGTAACGAAGCCAGGTCTGATCTCCGACTTCATGGACCTAAAGGTGCGTACTCAACCTGCTCCTAAAACCAGACGGGAATCAG CTGCAACAAAAAAGTCTTCCGAAGCAAAGAGTTCATCATCATCATCGTACACCGATCATTCTTCCTCTTCCTCCGGCACATCAACAAATGTAACCACAAC AACAACGTCAACGACCTTTACTGCGTCATATTGA
AA sequence Show only first row Show all	>Lus10042460 pacid=23153799 polypeptide=Lus10042460 locus=Lus10042460.g ID=Lus10042460.BGIv1.0 annot-version=v1.0 MAELAGVHNVKTYSYKELREATDNFSTANKIGEGGFGSVYKGRLKDGRLVAVKPLSAESRQGVGEFLAEIKAISEVEHENLVKLYGCCVEGNHRILVYNY LENNSLAQTLLGGSHSTLQFDWRTRTRISIGVARGLAFLHEEVRPYIVHRDIKASNILLDKDLTPKISDFGLAKLIPSHMTHVSTRVAGTIGYLAPEYAI RGQLTRRADIYSFGVLLVEIVSGRCNTNTRLPVEEQYILERTWQLYERKELIALVDTSLEGDFDPEEACRYLKIGLLCTQDSPKLRPSMSTVVKMLSGEK ELDDTMVTKPGLISDFMDLKVRTQPAPKTRRESAATKKSSEAKSSSSSSYTDHSSSSSGTSTNVTTTTTSTTFTASY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16670			Protein kinase superfamily pro...		Lus10042460 [exp]	0	1
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10042282 [exp]	1.4	0.9445
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10009386 [exp]	3.9	0.9010
AT5G05350			PLAC8 family protein (.1)		Lus10001260 [exp]	4.0	0.9219
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10013470 [exp]	4.8	0.8766
AT2G23450			Protein kinase superfamily pro...		Lus10019657 [exp]	5.7	0.8939
					Lus10000811 [exp]	7.2	0.8705
AT2G40600			appr-1-p processing enzyme fam...		Lus10034225 [exp]	8.9	0.8859
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10041986 [exp]	11.7	0.9129
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039493 [exp]	13.0	0.9086
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10017991 [exp]	14.4	0.8961

Compare expression of checked genes

Lus10042460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.