Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79040 161 / 8e-52 PSBR photosystem II subunit R (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026205 [exp] 238 / 2e-82 AT1G79040 191 / 6e-64 photosystem II subunit R (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G142200 [exp] 182 / 2e-60 AT1G79040 180 / 2e-59 photosystem II subunit R (.1) Potri.001G438700 [exp] 180 / 2e-59 AT1G79040 181 / 5e-60 photosystem II subunit R (.1) Potri.001G438800 [exp] 149 / 4e-47 AT1G79040 178 / 9e-59 photosystem II subunit R (.1) Potri.011G142300 [exp] 131 / 3e-40 AT1G79040 141 / 3e-44 photosystem II subunit R (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04725 [flax] [poplar] PsbR Photosystem II 10 kDa polypeptide PsbR
Representative CDS sequence Show only first row Show all	>Lus10042461 pacid=23153713 polypeptide=Lus10042461 locus=Lus10042461.g ID=Lus10042461.BGIv1.0 annot-version=v1.0 ATGGCATCTTTGGTGGCTTCATCAGTGACACTGAAACCAACTTCCCCTTTCCTTGAGAAAGCTGGTTCTAGACCAGTTTATGGAGTTCCTAGCCTTCGAA GAAAATCCTTCAAGGTTGTGGCCAGCGGTGTCAAGAAGATCAAAACTGACACCCCCTACGGAACTGGTGGTGGGATGAACCTGAGGAACGGCGTTGATGC TTCTGGCAGGAAGCCAACGGGAAAGGGAGTATACCAGTACGTAGACAAGTATGGTGCCAACGTCGATGGATACAGTCCTATCTACAACGCTGATGAATGG GCTCCAACTGGCGATACCTACGCCGGAGGACTCACTGGGTTAGCAATATGGGCAGTGACATTGGTTGGGATCCTAGCAGGAGGAGCTCTCCTTGTCTACA ACACCAGTGCTTTGTCTCAGTAA
AA sequence Show only first row Show all	>Lus10042461 pacid=23153713 polypeptide=Lus10042461 locus=Lus10042461.g ID=Lus10042461.BGIv1.0 annot-version=v1.0 MASLVASSVTLKPTSPFLEKAGSRPVYGVPSLRRKSFKVVASGVKKIKTDTPYGTGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNADEW APTGDTYAGGLTGLAIWAVTLVGILAGGALLVYNTSALSQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10042461 [exp]	0	1
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10026205 [exp]	1.0	0.9893
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10008747 [exp]	2.8	0.9699
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10027246 [exp]	3.2	0.9617
AT1G12250			Pentapeptide repeat-containing...		Lus10024602 [exp]	3.5	0.9564
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Lus10002673 [exp]	3.9	0.9679
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10013663 [exp]	4.9	0.9624
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Lus10023782 [exp]	7.1	0.9359
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002906 [exp]	8.7	0.9451
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10026458 [exp]	9.8	0.9362
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10030538 [exp]	10.0	0.9509

Compare expression of checked genes

Lus10042461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.