Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79050 594 / 0 recA DNA recombination family protein (.1.2) AT2G19490 251 / 3e-79 recA DNA recombination family protein (.1) AT3G10140 177 / 3e-51 RECA3 RECA homolog 3 (.1) AT3G32920 162 / 2e-47 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G20850 50 / 2e-06 ATRAD51 RAS associated with diabetes protein 51 (.1) AT3G22880 47 / 2e-05 ARLIM15, ATDMC1 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026204 [exp] 786 / 0 AT1G79050 642 / 0.0 recA DNA recombination family protein (.1.2) Lus10017151 [exp] 249 / 2e-78 AT2G19490 538 / 0.0 recA DNA recombination family protein (.1) Lus10021585 [exp] 245 / 6e-77 AT2G19490 545 / 0.0 recA DNA recombination family protein (.1) Lus10018037 [exp] 166 / 4e-46 AT3G10140 385 / 2e-131 RECA homolog 3 (.1) Lus10042033 [exp] 159 / 2e-44 AT3G10140 378 / 4e-130 RECA homolog 3 (.1) Lus10039928 [exp] 44 / 0.0001 AT5G20850 530 / 0.0 RAS associated with diabetes protein 51 (.1) Lus10027654 [exp] 42 / 0.0006 AT5G20850 531 / 0.0 RAS associated with diabetes protein 51 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G438900 [exp] 603 / 0 AT1G79050 609 / 0.0 recA DNA recombination family protein (.1.2) Potri.018G067900 [exp] 244 / 1e-76 AT2G19490 547 / 0.0 recA DNA recombination family protein (.1) Potri.006G148700 [exp] 243 / 4e-76 AT2G19490 535 / 0.0 recA DNA recombination family protein (.1) Potri.006G048000 [exp] 175 / 1e-50 AT3G10140 427 / 5e-149 RECA homolog 3 (.1) Potri.016G057700 [exp] 174 / 3e-50 AT3G10140 423 / 2e-147 RECA homolog 3 (.1) Potri.006G135200 [exp] 50 / 1e-06 AT5G20850 622 / 0.0 RAS associated with diabetes protein 51 (.1) Potri.010G081500 [exp] 45 / 6e-05 AT3G22880 613 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00154 [flax] [poplar] RecA recA bacterial DNA recombination protein
Representative CDS sequence Show only first row Show all	>Lus10042462 pacid=23153893 polypeptide=Lus10042462 locus=Lus10042462.g ID=Lus10042462.BGIv1.0 annot-version=v1.0 ATGCATTCGCCTTCACACTTAAAACCCAGAACCATCCATCTCACTCACTTTCCCAAAGCTCCCCCTTCGCATCCTCTTCTTCTTCCCCTTCACCGTCGGT CTTCTTTTGCCCTTTACCCCCGAGCCGCTACACATTCTGCTGCTGCTCTCAAGACACGCAATTCTTCCAACTCCTCCACTCTTCGTTGTGAGCTTGAAGG AAAAATCAATGGCTCCCCTTCCCCTGACTTCGACCCTCGATTCCTTGACCGGCAAAAGGCACTAGAAGCAGCAATGAATGACATAAATAGCTCATTTGGG AAAGGAAGTGTTACACGTTTGGGTAGTGCCGGTGGAGCATTGGTTGAGACGTTTCCAAGTGGCTGTTTGACGTTGGATTTTGCTTTAGGTGGTGGATTGC CAAGGGGGAGAATCGTAGAGATATATGGTCCAGAAAGTAGTGGCAAGACCACCCTCGCTCTCCATGCAATTGCAGAAAAGCTAGGTGGCAATGCAATGCT CGTGGATGCAGAGCATGCTTTTGATCCTGCGTATTCGAAAGCACTAGGGGTGGATGTTGAAAACTTGATTGTTTGCCAACCTGATCATGGGGAAATGGCA CTTGAAATTGCTGATCGTATGTGCAGATCTGGAGCGGTGGATCTTATATGTGTTGATTCAGTGTCAGCTCTTACTCCACGAGCAGAGATTGAAGGTGAGA TTGGGATGCAGCAAATGGGTCTGCAGGCACGCCTTATGAGTCAAGCTTTGCGTAAAATGTCAGGAAATGCTTCAAAAGCTGGCTGTACTCTTATCTTCCT TAATCAAATTAGATACAAGATTGGTGTATACTATGGGAATCCGGAAGTAACTAGTGGAGGCATTGCGTTGAAGTTCTTTGCCTCGGTTCGTCTTGAGATA CGTTCTACCGGGAAGATAAAGTCTGCGAAAGGTGATGAAGAAGTAGGGCTTCGTGTTCGCGTAAGAGTACAGAAGAGTAAGGTGTCAAGGCCATACAAAC AAGCTGAGTTCGAAATCATATTCGGAGAGGGAGTCAGTCAACAGGGTTGCATATTGGATTGTGCTGAGATGATGGGTGTGGTTGTAAAGAAAGGGTCTTG GTATAGTTATGAGGACCAAAGGTTGGGGCAAGGAAGAGACAGAGCATTGCAGTTCCTGAATGAAAACCCTAATCTGCTAGAAGAAATAGAGAAGAAAGTT CGATCAATGATGGTGGATGGGAGTGTGCATTCTGGCTTTCTGCCTGTAAGTAATGCAGCAACGTCCCAGGATGAGAGCTTGTTGGATGAACTCTAG
AA sequence Show only first row Show all	>Lus10042462 pacid=23153893 polypeptide=Lus10042462 locus=Lus10042462.g ID=Lus10042462.BGIv1.0 annot-version=v1.0 MHSPSHLKPRTIHLTHFPKAPPSHPLLLPLHRRSSFALYPRAATHSAAALKTRNSSNSSTLRCELEGKINGSPSPDFDPRFLDRQKALEAAMNDINSSFG KGSVTRLGSAGGALVETFPSGCLTLDFALGGGLPRGRIVEIYGPESSGKTTLALHAIAEKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDHGEMA LEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEI RSTGKIKSAKGDEEVGLRVRVRVQKSKVSRPYKQAEFEIIFGEGVSQQGCILDCAEMMGVVVKKGSWYSYEDQRLGQGRDRALQFLNENPNLLEEIEKKV RSMMVDGSVHSGFLPVSNAATSQDESLLDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79050			recA DNA recombination family ...		Lus10042462 [exp]	0	1
AT2G40430			unknown protein		Lus10037530 [exp]	9.0	0.7739
AT4G33800			unknown protein		Lus10033772 [exp]	11.0	0.7311
AT3G01580			Tetratricopeptide repeat (TPR)...		Lus10034497 [exp]	14.1	0.7163
AT3G21540			transducin family protein / WD...		Lus10023903 [exp]	14.4	0.7730
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10017663 [exp]	16.0	0.6030
AT5G40660			ATP12 protein-related (.1)		Lus10024202 [exp]	20.5	0.7537
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10040921 [exp]	21.5	0.7405
AT5G26680			5'-3' exonuclease family prote...		Lus10000270 [exp]	21.8	0.7509
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10042721 [exp]	24.5	0.6874
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10000399 [exp]	25.7	0.7169

Compare expression of checked genes

Lus10042462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.