Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31500 206 / 3e-64 DNAse I-like superfamily protein (.1.2.3.4) AT1G31530 119 / 1e-31 DNAse I-like superfamily protein (.1) AT3G58580 46 / 2e-05 DNAse I-like superfamily protein (.1) AT3G58560 46 / 2e-05 DNAse I-like superfamily protein (.1) AT3G18500 45 / 3e-05 DNAse I-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026203 [exp] 300 / 6e-101 AT1G31500 458 / 2e-162 DNAse I-like superfamily protein (.1.2.3.4) Lus10000006 [exp] 105 / 3e-28 AT1G31500 122 / 1e-35 DNAse I-like superfamily protein (.1.2.3.4) Lus10000005 [exp] 100 / 1e-26 AT1G31500 118 / 5e-34 DNAse I-like superfamily protein (.1.2.3.4) Lus10036357 [exp] 57 / 5e-09 AT3G18500 422 / 2e-145 DNAse I-like superfamily protein (.1.2.3) Lus10014775 [exp] 56 / 2e-08 AT3G18500 423 / 7e-146 DNAse I-like superfamily protein (.1.2.3) Lus10029338 [exp] 50 / 8e-07 AT3G58560 945 / 0.0 DNAse I-like superfamily protein (.1) Lus10016206 [exp] 50 / 8e-07 AT3G58560 944 / 0.0 DNAse I-like superfamily protein (.1) Lus10015981 [exp] 44 / 8e-05 AT3G58580 872 / 0.0 DNAse I-like superfamily protein (.1) Lus10012293 [exp] 44 / 9e-05 AT3G58560 949 / 0.0 DNAse I-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G106000 [exp] 228 / 1e-72 AT1G31500 457 / 1e-160 DNAse I-like superfamily protein (.1.2.3.4) Potri.016G061700 [exp] 52 / 2e-07 AT3G58560 926 / 0.0 DNAse I-like superfamily protein (.1) Potri.006G195600 [exp] 49 / 1e-06 AT3G58560 904 / 0.0 DNAse I-like superfamily protein (.1) Potri.018G032300 [exp] 42 / 0.0005 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10042463 pacid=23153860 polypeptide=Lus10042463 locus=Lus10042463.g ID=Lus10042463.BGIv1.0 annot-version=v1.0 ATGTTTGGGCTAGGGTTTCTCTATGCTGTACAAGTTTGTTCATTGTGCAGTGCTCTAATTGAAAAGAAATATGAAATTGGTTATTGTCTTACAGACTTCG AATGCTGCGGTCCTCATTTTTGCTTCATCGACTTCCAATTGCCTCTTCTTTCGCCAGGCTTAAGATTTAGTGTTGTCTCTTACAACATCTTGGCTCAGGC GTACGTGAAGAGTTCTCTGTTTCCACACTCTCCACCTGCTTGCTTGAAGTGGAAGGCTCGTTGCCAGTCAATTTTAACTGTTCTGAAAAGCTTAGAAGTT GATTTCCTCTGCTTGCAGGCAAGCTGGCCTCAGTTGCTAAATAATGAATACAAGTATGTTTTGGCACATGTTGCGAACTGCGTTTATACCCTTGATTTGG TGGTTCTTAGGGATCCAGAGTGGGCAGATGTGAAGCTTGCACAAGCAAAGTATCTTCTTTCCCGGCTGGCGAAGTTTAAGATCCTGGTTTCTGAAAAGTT TGAATGTGAACCTTCAGTAATCCTGACTGGTGACTTCAATTCAACCCCTGGAGACAAGGTTTACCAATACCTTGTTTCCGGCGATGCTTTGGATTCCACA CCTTCGGTAGAATGTGTGGATGAGCTGCCAATTCCTTTGCGCAGTATCTATGCATCAACCAGGGGAGAACCTCCATTTACAAACTGCACTCCAGATTTCA CCAATACACTTGATTACATTTTCTCTTCTCCTGGCGACCAGTTGAAACTAGTTGGCTTCCTTGAGCTTCCGGAAGCAGAGGACGCTGATGTTGCTGGGGG ATTGCCGAATCATTACCACCCAAGTGACCACCTTCCAATAGGTGCACAATTCGAGATTAGCAGTGCATAA
AA sequence Show only first row Show all	>Lus10042463 pacid=23153860 polypeptide=Lus10042463 locus=Lus10042463.g ID=Lus10042463.BGIv1.0 annot-version=v1.0 MFGLGFLYAVQVCSLCSALIEKKYEIGYCLTDFECCGPHFCFIDFQLPLLSPGLRFSVVSYNILAQAYVKSSLFPHSPPACLKWKARCQSILTVLKSLEV DFLCLQASWPQLLNNEYKYVLAHVANCVYTLDLVVLRDPEWADVKLAQAKYLLSRLAKFKILVSEKFECEPSVILTGDFNSTPGDKVYQYLVSGDALDST PSVECVDELPIPLRSIYASTRGEPPFTNCTPDFTNTLDYIFSSPGDQLKLVGFLELPEAEDADVAGGLPNHYHPSDHLPIGAQFEISSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31500			DNAse I-like superfamily prote...		Lus10042463 [exp]	0	1
AT1G78090		ATTPPB	Arabidopsis thaliana trehalose...		Lus10039339 [exp]	3.2	0.8100
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10012891 [exp]	6.6	0.8308
AT5G63040			unknown protein		Lus10039957 [exp]	10.6	0.7934
AT5G50950		FUM2	FUMARASE 2 (.1.2.3)		Lus10032296 [exp]	11.5	0.8349
AT4G30900			DNAse I-like superfamily prote...		Lus10022154 [exp]	22.2	0.8031
AT5G08170		ATAIH, EMB1873	EMBRYO DEFECTIVE 1873, AGMATIN...		Lus10042920 [exp]	26.1	0.8150
AT1G80210		BRCC36A, AtBRCC...	BRCA1/BRCA2-containing complex...		Lus10030352 [exp]	27.3	0.7773
AT5G08430			SWIB/MDM2 domain;Plus-3;GYF (....		Lus10020897 [exp]	28.5	0.8282
AT5G10070			RNase L inhibitor protein-rela...		Lus10002091 [exp]	33.7	0.8098
AT4G21585		ENDO4	endonuclease 4 (.1)		Lus10018451 [exp]	34.3	0.8148

Compare expression of checked genes

Lus10042463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.