Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33400 356 / 2e-114 TPR9 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G17900 46 / 4e-05 ASHR1, SDG37 ASH1-related 1, SET domain group 37 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026202 [exp] 855 / 0 AT1G33400 655 / 0.0 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029712 [exp] 45 / 0.0001 AT2G17900 615 / 0.0 ASH1-related 1, SET domain group 37 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G144200 [exp] 477 / 2e-161 AT1G33400 700 / 0.0 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042464 pacid=23153959 polypeptide=Lus10042464 locus=Lus10042464.g ID=Lus10042464.BGIv1.0 annot-version=v1.0 ATGGCTGCACATTGTGATATTCCTGAATCTTCTTTGGTTCGCAAGGAAGAACCCTATGCTCTGGTTGTTCTGAAGAACGGTCGGGAAAGTCATTGCCATT ACTGCTTAGGTGAACTACCACTCGATACAGTCCCTTGCCTCTCGTGTTCAATTCCCTTGTACTGCTCCCAGCATTGTCAAGTCCACGCAGGAGGAAAAAG TCCCGTAAGGTGCCAAGAGGAACAAAGAAATTATACTTACAGTAACAGCCTACGAAAACATGTTATGGAGGTAACTGCATGCTTTGATTCTGATACAGCT GCGGAGTGCTTCCCTGAGCATAAACATGAATGTGGTGGTGTGCACTGGCCTGCAGTCCTTCCGCCTGATGTTGTTTTGGCTGGCCGTATACTAGCTAAAC ATCTTTGTCAAAGTAGCTTTGTGCTAAAACCCGACACACTGATATCTCTGGGCTTATCTCACAACTATTCACTTATTGCTCAAGATACCAAGTTGGAGGT TCACATATATACTTGCGTGTTGATGTGTTGTCTCCAGTATGCTATTGGCTTAGAACTTCCTGTGAATGCTATTTATTTATCCCAGATCATCATACTTCTT TCACAAATAAGGGTGAATGCAATGGCCATTGTTCGGGTGAAATCTGATGCTCATGGGGGCCTTGCCTTTACTAGTAATATGGAACAGTTCCTCTCACGTA CTCTTTTTGTGCGGACAACAGAGTTTGTCCAGACTGGGTGTCCTTTGGAGTTGTCCTACGGTCCACAGGTTGGGCAATGGGACTGTACAGATCGCCTTCA AATTTTAGAAGATAAGTACTCATTCCTATGTCAGTGCAGCGGCTGCTCAGAACTAAATGTACCTGATCTAGTTCTAAATGCTTTCCGATGTACCAATCCA AATTGCACTGGAGTTGTCTTGGATAAAATAGTGACAAAGCGTGAAATGGATAAGCTGAATAACTCGCACAAAAGATTGCAGTTGAATGGTGATTCAGAGG TGAAGACTGACATCAAGAATTTAGTACGTTTTCATATCCAGCCACACAGTAGCTCTGGCCCTGTTGAACCTGGATACTGTTTGAAGTGTGGTTGTAATGT GTCATCTTGTTACTGCACGCTGGAAGATGCATTAGCATCAAAAGAAATTTCAAGTAACATACTCTCAGATGCTTCAAGGGCTCTTGACCTTTTACGATCA GTGTTGCATCCTTATAACAAACACATTGCTGAGGCTGAAGATAAACTAGCACAAGCATTTTGTTCGGCAGGAGACTTGCGATCTTCGGAGAGCTTATGTA AATCGTCAATTGCAATACTGGAAGTGCTTTATGGTGGGGATCATATAGTAATTGGATATGAACTAATCAAGCTTGCTAGCATCCAGCTATCCATGAATGA CCCTCGAGTTGGGGACACGAGGAGAAGACATGCAAACTTGGCCTTTTCTGGATGCCTTGAGGAAACCACCTGTAGTAAGCAGTTGAAATGA
AA sequence Show only first row Show all	>Lus10042464 pacid=23153959 polypeptide=Lus10042464 locus=Lus10042464.g ID=Lus10042464.BGIv1.0 annot-version=v1.0 MAAHCDIPESSLVRKEEPYALVVLKNGRESHCHYCLGELPLDTVPCLSCSIPLYCSQHCQVHAGGKSPVRCQEEQRNYTYSNSLRKHVMEVTACFDSDTA AECFPEHKHECGGVHWPAVLPPDVVLAGRILAKHLCQSSFVLKPDTLISLGLSHNYSLIAQDTKLEVHIYTCVLMCCLQYAIGLELPVNAIYLSQIIILL SQIRVNAMAIVRVKSDAHGGLAFTSNMEQFLSRTLFVRTTEFVQTGCPLELSYGPQVGQWDCTDRLQILEDKYSFLCQCSGCSELNVPDLVLNAFRCTNP NCTGVVLDKIVTKREMDKLNNSHKRLQLNGDSEVKTDIKNLVRFHIQPHSSSGPVEPGYCLKCGCNVSSCYCTLEDALASKEISSNILSDASRALDLLRS VLHPYNKHIAEAEDKLAQAFCSAGDLRSSESLCKSSIAILEVLYGGDHIVIGYELIKLASIQLSMNDPRVGDTRRRHANLAFSGCLEETTCSKQLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Lus10042464 [exp]	0	1
					Lus10009927 [exp]	2.4	0.9762
AT4G30550		GGP3	gamma-glutamyl peptidase 3, Cl...		Lus10015493 [exp]	4.5	0.9680
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10028330 [exp]	5.5	0.9590
					Lus10039496 [exp]	7.5	0.9614
					Lus10017955 [exp]	8.3	0.9618
					Lus10018837 [exp]	9.2	0.9568
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008669 [exp]	10.4	0.9442
					Lus10034352 [exp]	10.6	0.9494
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10009947 [exp]	12.0	0.8882
AT5G05340			Peroxidase superfamily protein...		Lus10030149 [exp]	12.6	0.9424

Compare expression of checked genes

Lus10042464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.