Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41540 152 / 2e-40 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 150 / 5e-40 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 149 / 2e-39 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G46260 149 / 3e-39 disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19500 148 / 3e-39 nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding (.1.2) AT5G38350 148 / 4e-39 Disease resistance protein (NBS-LRR class) family (.1) AT5G22690 148 / 5e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G31540 142 / 5e-37 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G46270 141 / 2e-36 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 140 / 3e-36 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026201 [exp] 582 / 0 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10000121 [exp] 496 / 2e-175 AT5G17680 277 / 1e-82 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 385 / 3e-124 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041078 [exp] 207 / 3e-60 AT5G17680 399 / 6e-126 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 196 / 2e-55 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 178 / 3e-49 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10016029 [exp] 158 / 2e-42 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10029722 [exp] 154 / 7e-41 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004075 [exp] 147 / 1e-38 AT4G12010 348 / 3e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068300 [exp] 220 / 6e-64 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 209 / 6e-60 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 196 / 2e-55 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 190 / 2e-53 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G097800 [exp] 187 / 2e-52 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070565 [exp] 186 / 3e-52 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070001 [exp] 186 / 3e-52 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 182 / 9e-51 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 180 / 4e-50 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 179 / 1e-49 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF07725 [flax] [poplar] LRR_3 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10042465 pacid=23153981 polypeptide=Lus10042465 locus=Lus10042465.g ID=Lus10042465.BGIv1.0 annot-version=v1.0 ATGATGCATGATTTGTTGCAGGAGATGGGTCAAGGTATTGTGAATGAGGAATCTGATGATCCAGGAGAACGAAGTTGGCTGTGGAATCCAAACGATGTAT ATGATGTGCTTGCTAGAAAAGGGGGAACCAGAAGAATCAAGGGCATATCTATGGAGGTATCTGGTGCAGGAGAGATGCATCTAGACTCTGATGCCTTCGC GAGGATGACTCGGCTAAGAGTCCTTAGGTTCTATGTGCCACGGAGTGGAAATGACGACCACGCTGCAATGCTGGTGTCCGAAGACGGCCTTCAATATCTT TCCAATCAGTTGATGAGCATCCATTGGCCCCGATTAAATTCAAGTTCTCTTCCACAAACGTTTTGTGCAGAGAACCTGATTGATCTTCGCCTTCCTTATA GTACCGTCAAGCATCTTTGGACTGGCGTCCAGAATCTTGGGAGTTTGAAATACATTGACCTCGGCTACTGTAAAAGCCTGGTGGAGTTGCCAGACTTATC CCATGCCAAAAGAATAGAGGACATGTATCTTTTGGGATGCGAAAGCTTAGAGGGGATCCCATCATATATTCAGCAGCTGGAGACACTAGCAAACTTCAAC GTCTGGAATTGTAAGAGCCTTCCAGATCTTCCAACTCAGTTTACATCAAAATTTATAAACTCTCTATCCGCCGAGAACTTCCCCGTACTCACAAACTATG AGCAAGTATACTTCGGTCCCGATGAACATCATCAGATCGAAGAAGAACCTGATGAAAATGCAGTGATACCCACCAAAGTTCTTGATGTCCGTAACAGCTT GAACATAACTGATCTGCGTTTGAATGGAACTGAGATCCAGGAGTTGCCAGCTTCCATTGAGCAGCTCACCTACATTATCCTCTTGGATATGTCCAACTCC AAGAGTCTCCCGATCTGTTTCGACCAATATCTGCAAGTTAAAGAAGCTCGAGAGACTTTATCTCTCGGGATGCGTGGGGCTGGAGACTTTTCCGGAGATT CTGGAGCCCATGGAAAAACTCTCTCAAGTTTTCTTGGTAGGGACGTCCATCAAAGAGTTGCCATCTATGTTCGCTCAGAATTTAGTGAACCTGAGTGGGC TAAGCCTTAA
AA sequence Show only first row Show all	>Lus10042465 pacid=23153981 polypeptide=Lus10042465 locus=Lus10042465.g ID=Lus10042465.BGIv1.0 annot-version=v1.0 MMHDLLQEMGQGIVNEESDDPGERSWLWNPNDVYDVLARKGGTRRIKGISMEVSGAGEMHLDSDAFARMTRLRVLRFYVPRSGNDDHAAMLVSEDGLQYL SNQLMSIHWPRLNSSSLPQTFCAENLIDLRLPYSTVKHLWTGVQNLGSLKYIDLGYCKSLVELPDLSHAKRIEDMYLLGCESLEGIPSYIQQLETLANFN VWNCKSLPDLPTQFTSKFINSLSAENFPVLTNYEQVYFGPDEHHQIEEEPDENAVIPTKVLDVRNSLNITDLRLNGTEIQELPASIEQLTYIILLDMSNS KSLPICFDQYLQVKEARETLSLGMRGAGDFSGDSGAHGKTLSSFLGRDVHQRVAIYVRSEFSEPEWAKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46490			Disease resistance protein (TI...		Lus10042465 [exp]	0	1
AT5G03310			SAUR-like auxin-responsive pro...		Lus10037990 [exp]	1.4	0.8510
					Lus10041974 [exp]	8.0	0.8108
					Lus10032744 [exp]	8.9	0.7896
					Lus10017936 [exp]	9.4	0.7975
AT4G26010			Peroxidase superfamily protein...		Lus10005679 [exp]	12.6	0.8259
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021135 [exp]	14.5	0.8651
AT1G08090		LIN1, ACH1, NRT...	LATERAL ROOT INITIATION 1, nit...		Lus10016120 [exp]	14.8	0.7786
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10000973 [exp]	23.9	0.8336
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10029033 [exp]	26.9	0.8181
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10012817 [exp]	29.1	0.8305

Compare expression of checked genes

Lus10042465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.