Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56010 260 / 1e-84 NAC NAC1, ANAC021, ANAC022 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) AT3G12977 234 / 4e-75 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT4G28530 203 / 3e-62 NAC ANAC074 NAC domain containing protein 74 (.1.2) AT3G18400 196 / 4e-60 NAC ANAC058 NAC domain containing protein 58 (.1) AT1G76420 192 / 5e-58 NAC NAC368, CUC3, ANAC031 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G18270 191 / 7e-58 NAC ANAC087 Arabidopsis NAC domain containing protein 87 (.1.2) AT5G07680 189 / 2e-57 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2) AT2G24430 188 / 5e-57 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) AT5G39610 187 / 1e-56 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1) AT5G53950 189 / 2e-56 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026200 [exp] 545 / 0 AT1G56010 254 / 3e-82 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) Lus10022915 [exp] 205 / 3e-63 AT4G28530 274 / 7e-91 NAC domain containing protein 74 (.1.2) Lus10033905 [exp] 198 / 2e-60 AT4G28530 271 / 2e-89 NAC domain containing protein 74 (.1.2) Lus10005537 [exp] 191 / 6e-58 AT5G53950 317 / 3e-107 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10013205 [exp] 193 / 1e-57 AT1G76420 270 / 4e-88 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10020165 [exp] 190 / 1e-56 AT2G24430 306 / 2e-102 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10003435 [exp] 188 / 2e-56 AT5G18270 315 / 2e-106 Arabidopsis NAC domain containing protein 87 (.1.2) Lus10026879 [exp] 187 / 4e-56 AT5G18270 325 / 3e-110 Arabidopsis NAC domain containing protein 87 (.1.2) Lus10026966 [exp] 187 / 1e-55 AT2G24430 311 / 6e-105 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G065400 [exp] 315 / 2e-106 AT1G56010 337 / 4e-116 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) Potri.005G098200 [exp] 310 / 2e-104 AT1G56010 332 / 6e-114 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) Potri.005G225800 [exp] 207 / 1e-64 AT4G28530 270 / 1e-89 NAC domain containing protein 74 (.1.2) Potri.002G037100 [exp] 205 / 6e-64 AT4G28530 276 / 6e-92 NAC domain containing protein 74 (.1.2) Potri.012G001400 [exp] 193 / 2e-58 AT5G61430 448 / 1e-158 NAC domain containing protein 100 (.1) Potri.002G005800 [exp] 194 / 3e-58 AT1G76420 326 / 7e-110 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.017G086200 [exp] 192 / 4e-58 AT5G61430 386 / 2e-134 NAC domain containing protein 100 (.1) Potri.015G046800 [exp] 191 / 5e-58 AT3G18400 326 / 1e-111 NAC domain containing protein 58 (.1) Potri.012G056300 [exp] 191 / 6e-58 AT3G18400 317 / 6e-108 NAC domain containing protein 58 (.1) Potri.005G255900 [exp] 192 / 2e-57 AT1G76420 295 / 4e-98 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10042466 pacid=23153542 polypeptide=Lus10042466 locus=Lus10042466.g ID=Lus10042466.BGIv1.0 annot-version=v1.0 ATGTCTGTGAGCAAGATAAGGATGGTGGAGGCGAAGTTGGCTCCAGGGTTCAGATTTCATCCGAGAGATGAAGAGCTTGTCTGTGACTACCTCTTCAACA AGATCACCTTCTCCCGCTCTCTCTTCTTCATCGAAGTTGATCTCAACAGCTGCGAACCTTGGGATCTTCCTGAAACAACAAGGGTGGGAGGAAAAGAGTG GTACTTCTACAGCCGGAGGGATCGAAAGTATGCAACGGGGCTCCGAACCAACAGAGCCACCGCGTCGGGGTATTGGAAGGCTACCGGAAAGGATCGGGCG GTTATACGAAACGAAGTATCAATCAACAAACAAAGGCAACAACAACTAGTCGGGATGCGAAAGACCTTGGTGTTTTACCAAGGCCGAGCCCCTAAAGGCC ACAAAACCGATTGGGTTATGCACGAATTCCGACTCGAAGGCCCGCTTGCTCGCCCTAGAACAACTGCTTCCTCTCATAATAAGGAGGACTGGGTCTTGTG TCGAGTGTTCTACAAGGACAAAGAAGCTTTCAATTCCAAACAAAGCAAGATTGGAATTCTTCGAAACAACAACATCAACAGCAACAACAGCTATGAAGAT GATGATGATGATTATGTGGAGAATGAAGATAGCTCGTCTTCCCACCTCCCCCCATTAACAGATTCTTCTTACAACATCACTTTTGGTCACCACCAACAAC AACCCATAGTACTTGGCAATTGTTTGAATGATGATCAGTATGAGCAAGTGCCCTGCTTCTCCATTTTATCCCAAAAAGCGTTATCTTCGCCTTCTGTGAT CCCTCAGTTCAACTTCTCCCATCATCATGATATCAACGACAACAACTTGATCACCACTGCAACAACTGCCGTTTCCGATGCCTCGTTAATATTTCCTATT GATCATCATCATGTGATCAACAATGATCATTTGGAGGATCATGACACTTTGAGTAATTGTGACAAGAAGGTCATGAAAGAAGTGTTGAATCATCTCACCA AGGTGGAAAGCACCAGTTATAATAACTACAATTACCAGCTTTATTCATCATCCTTGAGCTTGGTTGAAGGAAGCCCTGAGAGCTACCTCTCTGAGGTGGG CATCGCCAACATTTGGAATCGTTATTGA
AA sequence Show only first row Show all	>Lus10042466 pacid=23153542 polypeptide=Lus10042466 locus=Lus10042466.g ID=Lus10042466.BGIv1.0 annot-version=v1.0 MSVSKIRMVEAKLAPGFRFHPRDEELVCDYLFNKITFSRSLFFIEVDLNSCEPWDLPETTRVGGKEWYFYSRRDRKYATGLRTNRATASGYWKATGKDRA VIRNEVSINKQRQQQLVGMRKTLVFYQGRAPKGHKTDWVMHEFRLEGPLARPRTTASSHNKEDWVLCRVFYKDKEAFNSKQSKIGILRNNNINSNNSYED DDDDYVENEDSSSSHLPPLTDSSYNITFGHHQQQPIVLGNCLNDDQYEQVPCFSILSQKALSSPSVIPQFNFSHHHDINDNNLITTATTAVSDASLIFPI DHHHVINNDHLEDHDTLSNCDKKVMKEVLNHLTKVESTSYNNYNYQLYSSSLSLVEGSPESYLSEVGIANIWNRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Lus10042466 [exp]	0	1
AT5G03890			unknown protein		Lus10015117 [exp]	2.2	0.9601
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	4.2	0.9535
AT2G39415			F-box family protein (.1)		Lus10042304 [exp]	4.2	0.9474
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	5.5	0.9587
AT5G12380		ANNAT8	annexin 8 (.1)		Lus10019780 [exp]	9.5	0.9305
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	9.6	0.9495
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	10.5	0.9492
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020359 [exp]	10.6	0.9307
AT5G19730			Pectin lyase-like superfamily ...		Lus10028364 [exp]	13.3	0.9399
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10023002 [exp]	13.4	0.9370

Compare expression of checked genes

Lus10042466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.