Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17160 471 / 1e-166 pfkB-like carbohydrate kinase family protein (.1.2) AT5G03300 75 / 7e-15 ADK2 adenosine kinase 2 (.1) AT3G09820 74 / 1e-14 ADK1, ATADK1 adenosine kinase 1 (.1.2) AT1G66430 64 / 3e-11 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 61 / 4e-10 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 60 / 7e-10 STH pfkB-like carbohydrate kinase family protein (.1) AT1G06020 54 / 7e-08 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 52 / 2e-07 pfkB-like carbohydrate kinase family protein (.1) AT5G43910 52 / 2e-07 pfkB-like carbohydrate kinase family protein (.1.2.3) AT4G10260 52 / 3e-07 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026199 [exp] 698 / 0 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2) Lus10040417 [exp] 62 / 1e-10 AT5G03300 599 / 0.0 adenosine kinase 2 (.1) Lus10009526 [exp] 61 / 3e-10 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10023532 [exp] 61 / 5e-10 AT5G03300 599 / 0.0 adenosine kinase 2 (.1) Lus10028089 [exp] 60 / 7e-10 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Lus10023197 [exp] 60 / 1e-09 AT5G03300 590 / 0.0 adenosine kinase 2 (.1) Lus10026865 [exp] 57 / 8e-09 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 57 / 8e-09 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 55 / 4e-08 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G114100 [exp] 519 / 0 AT1G17160 474 / 8e-168 pfkB-like carbohydrate kinase family protein (.1.2) Potri.010G224300 [exp] 69 / 6e-13 AT5G03300 620 / 0.0 adenosine kinase 2 (.1) Potri.008G038100 [exp] 66 / 7e-12 AT5G03300 622 / 0.0 adenosine kinase 2 (.1) Potri.002G034000 [exp] 61 / 4e-10 AT1G19600 556 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 60 / 1e-09 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.005G229100 [exp] 59 / 2e-09 AT1G19600 558 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 56 / 1e-08 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 56 / 2e-08 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 53 / 2e-07 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 52 / 2e-07 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10042467 pacid=23153640 polypeptide=Lus10042467 locus=Lus10042467.g ID=Lus10042467.BGIv1.0 annot-version=v1.0 ATGAAAGGAATCACACTTCCGTCACCAAACCGCCACCATTGCTTCCCTAAACTCCCCAGAAACCCAACTAACCAACCGATTGAAAAATTCTCAGTTTCAA TTCAATCCATCACCAAGCATCATCGAGGATCGCTTCTTTTCCCCACTCTCGCCGTCAAATCCAACCAAACCCCTCAACCTCTCCACGATTCCTCGTCGCC GCCGCTGGTGGTTGTCGGATCCGCCAATGCCGACATCTACGTCGAGATCGACAGACTCCCCAAAGAAGGAGAGACCATCTCGGCCATCACAGGCCAGACA CTCGCCGGCGGGAAGGGCGCCAACCAGGCTGCCTGTGGCGGTAAACTTTCGTACCCGACTTACTTTGTGGGGCAGGTGGGTGATGATGCCCACGGGAATT TGATCACTGAAGCTCTTACGAAAGGCAGGGTGCGTCTAGATTATCTGAGGAACGTTGGGGGTGGTGATGTGCCAACTGGTCATGCTGTGGTGATGCTGCA GCCTGGTGGGCAGAACTCCATTATCATTGTTGGCGGAGCTAACATGAGTTGCTGGCCTGAGAAACTCACTGATGAGGATTTGCAAATTATCAAGAACGCT GGCATTGTTTTGCTTCAGAGAGAGATCCCTGATTCTGTCAACATTCAAGTTGCTCAGGCTGCGAAAGCTGCTGGTGTTCCTGTGATTTTAGATGCTGGTG GAGTCGATACACCTATTCCGGCTGAACTGTTCAAAGCTGTGGACATATTCAGCCCAAATGAAACTGAGCTTGCTCGAATCACAGGGATGTCAACTGAAAG CTTTGAACAAATCGGAGAGGCTGTCAAGAAGTGCCACAAACTGGGAGTTAAGCAAGTTCTGTTGAAGCTCGGATCTAGAGGGTCTGCCTTATTTGTCGAA GGGGAAAAGCCAATCAAACAACCAATTATACCAGCTGCAAAAGTTCTAGACACTACAGGAGCTGGAGATACTTTTACTGCCTCTTTTGCCGTTGCACTTG TCGAAGGGAACTCAAAAGAAGAATGCTTGAGATTTGCAGCTGCAGCTGCTTCTCTTTGTGTTCAAGTCAAGGGAGCCATTCCCAGTATGCCAGATCGGGC CTCGGTTGCTGATCTTCTTCAGGCTGTGTAA
AA sequence Show only first row Show all	>Lus10042467 pacid=23153640 polypeptide=Lus10042467 locus=Lus10042467.g ID=Lus10042467.BGIv1.0 annot-version=v1.0 MKGITLPSPNRHHCFPKLPRNPTNQPIEKFSVSIQSITKHHRGSLLFPTLAVKSNQTPQPLHDSSSPPLVVVGSANADIYVEIDRLPKEGETISAITGQT LAGGKGANQAACGGKLSYPTYFVGQVGDDAHGNLITEALTKGRVRLDYLRNVGGGDVPTGHAVVMLQPGGQNSIIIVGGANMSCWPEKLTDEDLQIIKNA GIVLLQREIPDSVNIQVAQAAKAAGVPVILDAGGVDTPIPAELFKAVDIFSPNETELARITGMSTESFEQIGEAVKKCHKLGVKQVLLKLGSRGSALFVE GEKPIKQPIIPAAKVLDTTGAGDTFTASFAVALVEGNSKEECLRFAAAAASLCVQVKGAIPSMPDRASVADLLQAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17160			pfkB-like carbohydrate kinase ...		Lus10042467 [exp]	0	1
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10015205 [exp]	2.8	0.9388
AT5G08680			ATP synthase alpha/beta family...		Lus10035264 [exp]	8.9	0.9347
AT5G08680			ATP synthase alpha/beta family...		Lus10034632 [exp]	11.4	0.9335
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10008647 [exp]	14.6	0.9308
AT2G01720			Ribophorin I (.1)		Lus10040410 [exp]	16.9	0.9264
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10032520 [exp]	18.0	0.9158
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	19.7	0.9234
AT3G16480		MPPALPHA	mitochondrial processing pepti...		Lus10012926 [exp]	21.5	0.9055
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10041519 [exp]	22.8	0.9166
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031186 [exp]	26.1	0.9101

Compare expression of checked genes

Lus10042467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.