Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78380 307 / 5e-107 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) AT1G17180 303 / 1e-105 ATGSTU25 glutathione S-transferase TAU 25 (.1) AT1G78360 292 / 3e-101 ATGSTU21 glutathione S-transferase TAU 21 (.1) AT1G17170 288 / 2e-99 ATGSTU24 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1) AT1G78370 282 / 3e-97 ATGSTU20 glutathione S-transferase TAU 20 (.1) AT1G78340 281 / 5e-97 ATGSTU22 glutathione S-transferase TAU 22 (.1) AT1G53680 280 / 3e-96 ATGSTU28 glutathione S-transferase TAU 28 (.1) AT1G78320 268 / 1e-91 ATGSTU23 glutathione S-transferase TAU 23 (.1) AT1G17190 263 / 8e-90 ATGSTU26 glutathione S-transferase tau 26 (.1) AT3G43800 261 / 6e-89 ATGSTU27 glutathione S-transferase tau 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026199 [exp] 458 / 1e-160 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2) Lus10042469 [exp] 394 / 4e-141 AT1G78380 284 / 5e-98 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10026198 [exp] 300 / 4e-104 AT1G78380 295 / 3e-102 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10042470 [exp] 298 / 2e-103 AT1G78380 291 / 1e-100 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10005592 [exp] 271 / 1e-92 AT1G17180 271 / 9e-93 glutathione S-transferase TAU 25 (.1) Lus10030020 [exp] 268 / 9e-92 AT1G17180 238 / 1e-79 glutathione S-transferase TAU 25 (.1) Lus10035304 [exp] 254 / 6e-86 AT1G17180 238 / 6e-80 glutathione S-transferase TAU 25 (.1) Lus10019480 [exp] 251 / 8e-85 AT1G17180 231 / 6e-77 glutathione S-transferase TAU 25 (.1) Lus10030362 [exp] 211 / 8e-69 AT1G17170 210 / 7e-69 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G436600 [exp] 344 / 9e-122 AT1G78380 318 / 2e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G140800 [exp] 341 / 1e-120 AT1G78380 318 / 1e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437200 [exp] 336 / 1e-118 AT1G78380 308 / 2e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437400 [exp] 335 / 4e-118 AT1G78380 316 / 2e-110 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437000 [exp] 334 / 1e-117 AT1G78380 308 / 1e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436800 [exp] 326 / 2e-114 AT1G17180 308 / 2e-107 glutathione S-transferase TAU 25 (.1) Potri.011G140400 [exp] 325 / 3e-114 AT1G78380 308 / 9e-108 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437100 [exp] 325 / 5e-114 AT1G78380 304 / 7e-106 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G431700 [exp] 319 / 1e-111 AT1G78380 307 / 4e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436500 [exp] 312 / 5e-109 AT1G78380 303 / 2e-105 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042468 pacid=23153557 polypeptide=Lus10042468 locus=Lus10042468.g ID=Lus10042468.BGIv1.0 annot-version=v1.0 ATGTCGGACGCCGAGGTGATTCTGCTGGACACATGGGTGAGCCCGTTCGGTATGCGGGTGAGAATCGCTCTGGCTGAGAAAGGGATCAAACACGAGTACA GGGAAGAGGATCTGAGGAACAAGAGTGATCTCCTTCTCAAGATGAACCCCATCCACAAGAAGATCCCTGTTCTTATCCACAACGGGAATCCCGTTTGCGA GTCCAGCATCATTGTTCAGTATATTGATGAGGCTTGGAAGGATAAGGCTCCTTCCTTGCTTCCTTCTGATCCCTACGACAGAGCTCAGGCCAGATTCTGG GCCGATTTCATCGATAAGAAGATATATGATGCTGGGAGGAAGGTATGGACAACAAAAGGGGAAGAGCAGAAAGCAGCGACAGAGGAGTTCATCAGCTACC TGAAAACACTGGAAGGAGAGCTCGGGGAGAAGTCGTACTTTGGAGGGGAGAAGCTTGGGTTTGTGGATGTAACAATGGTGCCATTCTACTCATGGTTCCA TGCTTACGAAGTGAGTGGAAATTTCAGCATCGAATCCCACTGCCCAAAGCTGGTGGAATGGGCCAAGAGGTGCATGCAGCACGATAGCGTGGCCAAGACG CTTCCCGACCCCAAGAAGGTGTATGAGTTCGTTCTGATGCTGAAAAAGAAGCTTGGCATCGAGTAA
AA sequence Show only first row Show all	>Lus10042468 pacid=23153557 polypeptide=Lus10042468 locus=Lus10042468.g ID=Lus10042468.BGIv1.0 annot-version=v1.0 MSDAEVILLDTWVSPFGMRVRIALAEKGIKHEYREEDLRNKSDLLLKMNPIHKKIPVLIHNGNPVCESSIIVQYIDEAWKDKAPSLLPSDPYDRAQARFW ADFIDKKIYDAGRKVWTTKGEEQKAATEEFISYLKTLEGELGEKSYFGGEKLGFVDVTMVPFYSWFHAYEVSGNFSIESHCPKLVEWAKRCMQHDSVAKT LPDPKKVYEFVLMLKKKLGIE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10042468 [exp]	0	1
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10028349 [exp]	4.2	0.9179
					Lus10025225 [exp]	6.3	0.9063
					Lus10025141 [exp]	9.0	0.9051
					Lus10012064 [exp]	11.0	0.8556
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10026779 [exp]	11.3	0.8928
AT5G40370		GRXC2	glutaredoxin C2, Glutaredoxin ...		Lus10013089 [exp]	15.1	0.8238
AT5G22580			Stress responsive A/B Barrel D...		Lus10020555 [exp]	15.5	0.8803
					Lus10017954 [exp]	17.8	0.8800
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032622 [exp]	19.3	0.8708
AT4G19510			Disease resistance protein (TI...		Lus10008209 [exp]	21.7	0.8711

Compare expression of checked genes

Lus10042468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.