Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78340 285 / 3e-98 ATGSTU22 glutathione S-transferase TAU 22 (.1) AT1G78380 281 / 5e-97 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) AT1G17180 278 / 1e-95 ATGSTU25 glutathione S-transferase TAU 25 (.1) AT1G78360 272 / 3e-93 ATGSTU21 glutathione S-transferase TAU 21 (.1) AT1G17170 270 / 3e-92 ATGSTU24 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1) AT1G53680 270 / 3e-92 ATGSTU28 glutathione S-transferase TAU 28 (.1) AT1G78370 269 / 3e-92 ATGSTU20 glutathione S-transferase TAU 20 (.1) AT1G17190 249 / 4e-84 ATGSTU26 glutathione S-transferase tau 26 (.1) AT3G43800 246 / 5e-83 ATGSTU27 glutathione S-transferase tau 27 (.1) AT1G78320 243 / 1e-81 ATGSTU23 glutathione S-transferase TAU 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042468 [exp] 394 / 4e-141 AT1G78380 306 / 6e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10026199 [exp] 401 / 3e-138 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2) Lus10026198 [exp] 286 / 7e-99 AT1G78380 295 / 3e-102 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10042470 [exp] 285 / 4e-98 AT1G78380 291 / 1e-100 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10005592 [exp] 257 / 3e-87 AT1G17180 271 / 9e-93 glutathione S-transferase TAU 25 (.1) Lus10030020 [exp] 249 / 3e-84 AT1G17180 238 / 1e-79 glutathione S-transferase TAU 25 (.1) Lus10019480 [exp] 241 / 1e-80 AT1G17180 231 / 6e-77 glutathione S-transferase TAU 25 (.1) Lus10035304 [exp] 234 / 5e-78 AT1G17180 238 / 6e-80 glutathione S-transferase TAU 25 (.1) Lus10030362 [exp] 212 / 2e-69 AT1G17170 210 / 7e-69 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G140800 [exp] 318 / 2e-111 AT1G78380 318 / 1e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436600 [exp] 316 / 1e-110 AT1G78380 318 / 2e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437000 [exp] 310 / 5e-108 AT1G78380 308 / 1e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437200 [exp] 309 / 9e-108 AT1G78380 308 / 2e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437400 [exp] 309 / 1e-107 AT1G78380 316 / 2e-110 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G140400 [exp] 306 / 7e-107 AT1G78380 308 / 9e-108 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437100 [exp] 298 / 2e-103 AT1G78380 304 / 7e-106 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436800 [exp] 297 / 3e-103 AT1G17180 308 / 2e-107 glutathione S-transferase TAU 25 (.1) Potri.019G130433 [exp] 295 / 3e-102 AT1G17180 292 / 3e-101 glutathione S-transferase TAU 25 (.1) Potri.001G436500 [exp] 292 / 4e-101 AT1G78380 303 / 2e-105 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042469 pacid=23153471 polypeptide=Lus10042469 locus=Lus10042469.g ID=Lus10042469.BGIv1.0 annot-version=v1.0 ATGGCGGACGACGGCGAGGTGATTCTGCTGGACACGTGGGTGAGCCCGTTCGGTAAGCGGGTGAAAATTGCTCTTGCGGAGAAAGGCATCGAATACGAGC GCAGGGAAGAGGATCTGAGGGACAAGAGTGATCTTCTTATGAAAATGAACCCCGTCCACAAGAAGATCCCTGTTCTCATCCACAACGGGAGGCCCGTTTG CGAGTCCAATGCCATTGTTCAGTACATTGATGAGGCTTGGAAGGATAAGGCTCCTTCGTTGCTTCCTTCTGATCCCTACGACAGAGCTGAGGCCAGATTC TGGGTTGATTTTGTCGATAACAAGATACATGATGCTGGGAGGAGGATATGGACAGGGAAAGGTGAAGAGCAGAAAGCAGCAACAGAGGAGTTCATCAGCC ACCTGAAAACAATGGAAGGAGAATTGGGGGAGAAGCCATACTTTGGTGGCGAGAAGATTGGGTTTGTGGATGTAACAATGGTGCCATACTACTCATGGTT CCATGCTTGTCAAGTGTGTGGAAACTTCAGCATCGAATCACACTGCCCAAAGCTAATTGAATGGGGCAAGAGGTGCATGCAGCACGACAGTGTGGCCAAG TCCCTTCCGGACCCCAACAAGGTGTATGGCTTCGTTCTACACGTCAGAAAGAGGCTCGGCATCGAGTAA
AA sequence Show only first row Show all	>Lus10042469 pacid=23153471 polypeptide=Lus10042469 locus=Lus10042469.g ID=Lus10042469.BGIv1.0 annot-version=v1.0 MADDGEVILLDTWVSPFGKRVKIALAEKGIEYERREEDLRDKSDLLMKMNPVHKKIPVLIHNGRPVCESNAIVQYIDEAWKDKAPSLLPSDPYDRAEARF WVDFVDNKIHDAGRRIWTGKGEEQKAATEEFISHLKTMEGELGEKPYFGGEKIGFVDVTMVPYYSWFHACQVCGNFSIESHCPKLIEWGKRCMQHDSVAK SLPDPNKVYGFVLHVRKRLGIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10042469 [exp]	0	1
AT4G34730			ribosome-binding factor A fami...		Lus10018065 [exp]	1.0	0.9138
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Lus10002626 [exp]	1.4	0.9115
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027576 [exp]	5.3	0.8918
AT1G49380			cytochrome c biogenesis protei...		Lus10040510 [exp]	7.3	0.9006
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10002222 [exp]	14.0	0.8854
AT3G50685			unknown protein		Lus10014321 [exp]	21.0	0.8314
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10041096 [exp]	24.1	0.8262
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10018210 [exp]	25.3	0.8330
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10042524 [exp]	25.8	0.8837
AT4G35910			Adenine nucleotide alpha hydro...		Lus10042060 [exp]	26.2	0.8341

Compare expression of checked genes

Lus10042469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.