Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17180 259 / 6e-88 ATGSTU25 glutathione S-transferase TAU 25 (.1) AT1G78380 258 / 6e-88 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) AT1G17170 246 / 4e-83 ATGSTU24 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1) AT1G17190 246 / 6e-83 ATGSTU26 glutathione S-transferase tau 26 (.1) AT1G53680 245 / 1e-82 ATGSTU28 glutathione S-transferase TAU 28 (.1) AT1G78370 243 / 1e-81 ATGSTU20 glutathione S-transferase TAU 20 (.1) AT1G78340 242 / 3e-81 ATGSTU22 glutathione S-transferase TAU 22 (.1) AT1G78360 232 / 2e-77 ATGSTU21 glutathione S-transferase TAU 21 (.1) AT1G78320 226 / 3e-75 ATGSTU23 glutathione S-transferase TAU 23 (.1) AT3G43800 214 / 3e-70 ATGSTU27 glutathione S-transferase tau 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026198 [exp] 396 / 6e-142 AT1G78380 295 / 3e-102 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10042468 [exp] 271 / 9e-93 AT1G78380 306 / 6e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10026199 [exp] 274 / 1e-88 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2) Lus10042469 [exp] 255 / 2e-86 AT1G78380 284 / 5e-98 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10005592 [exp] 247 / 3e-83 AT1G17180 271 / 9e-93 glutathione S-transferase TAU 25 (.1) Lus10019480 [exp] 217 / 2e-71 AT1G17180 231 / 6e-77 glutathione S-transferase TAU 25 (.1) Lus10030020 [exp] 206 / 4e-67 AT1G17180 238 / 1e-79 glutathione S-transferase TAU 25 (.1) Lus10035304 [exp] 194 / 2e-62 AT1G17180 238 / 6e-80 glutathione S-transferase TAU 25 (.1) Lus10030362 [exp] 189 / 2e-60 AT1G17170 210 / 7e-69 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G140800 [exp] 292 / 4e-101 AT1G78380 318 / 1e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436600 [exp] 288 / 2e-99 AT1G78380 318 / 2e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437000 [exp] 286 / 6e-99 AT1G78380 308 / 1e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436800 [exp] 286 / 6e-99 AT1G17180 308 / 2e-107 glutathione S-transferase TAU 25 (.1) Potri.001G437200 [exp] 285 / 3e-98 AT1G78380 308 / 2e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437400 [exp] 282 / 3e-97 AT1G78380 316 / 2e-110 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G431700 [exp] 281 / 9e-97 AT1G78380 307 / 4e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G140400 [exp] 280 / 3e-96 AT1G78380 308 / 9e-108 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437100 [exp] 276 / 9e-95 AT1G78380 304 / 7e-106 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436500 [exp] 274 / 5e-94 AT1G78380 303 / 2e-105 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042470 pacid=23153864 polypeptide=Lus10042470 locus=Lus10042470.g ID=Lus10042470.BGIv1.0 annot-version=v1.0 ATGGCGGATGATAAGGGATCTGTGGTTCTGCTGGATTTCTGGGGGAGCCCCTTTGGGATGAGAGTGAGAATCGCTCTGGCAGAGAAGGGCGTAAAGTACG AGTACAAGGAAGAGCACTTGCTGACTTGGACCAAAACCCCTCTCCTTCTAGAGAGCAACCCTATCCACAAGAAGATCCCAGTCCTCATCCACAACGCCAA ACCCATCTCCGAATCCTTGCTCATCGTTCAGTACATCGACGAGGTCTGGAACCATACAGCGCCGTTGCTGCCCTCTGATCCTCACCAGAGATCCCACGCC AGATTCTGGGCTGATTTCGTTGACAAAAAGATATACGATCTGGGGAAGAAGATATGGGCTGGGAAAGGGGAAGAAAAGGAAGCAGGCAAGAAAGAATTGA TCGAATCCTTCAAGGTGCTGGAAGGAGAATTAGGGAGCAAGACCTACTTTGGAGGGGAAACTATAGGGTATGTGGACGTGGCTTTAGTTCCATTCTACAC ATGGTTTCATTCATTTGAAGTTGAAGGCAAATTCAGCATTGAGGCAGAGTGCCCCAAGCTCATTGCTTGGGCCAAGAGGTGCTTGCAGAAGGAAAGCGTT TCCAGGTCGTTGGTTGACCCAGTTAAGGTCTATAATGAACTTATTTTGGAGATCAAGAAGAAATACGGTTTGTAA
AA sequence Show only first row Show all	>Lus10042470 pacid=23153864 polypeptide=Lus10042470 locus=Lus10042470.g ID=Lus10042470.BGIv1.0 annot-version=v1.0 MADDKGSVVLLDFWGSPFGMRVRIALAEKGVKYEYKEEHLLTWTKTPLLLESNPIHKKIPVLIHNAKPISESLLIVQYIDEVWNHTAPLLPSDPHQRSHA RFWADFVDKKIYDLGKKIWAGKGEEKEAGKKELIESFKVLEGELGSKTYFGGETIGYVDVALVPFYTWFHSFEVEGKFSIEAECPKLIAWAKRCLQKESV SRSLVDPVKVYNELILEIKKKYGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10042470 [exp]	0	1
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10026198 [exp]	1.4	0.9119
AT5G38900			Thioredoxin superfamily protei...		Lus10034369 [exp]	2.4	0.8715
AT1G11930			Predicted pyridoxal phosphate-...		Lus10020039 [exp]	2.8	0.8550
AT1G14690		MAP65-7	microtubule-associated protein...		Lus10035098 [exp]	3.5	0.8760
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10039898 [exp]	4.5	0.8819
AT5G58070		ATTIL	temperature-induced lipocalin ...		Lus10036298 [exp]	5.3	0.8564
AT5G53940			Yippee family putative zinc-bi...		Lus10013992 [exp]	5.5	0.8152
AT1G64850			Calcium-binding EF hand family...		Lus10013613 [exp]	6.8	0.8219
AT4G31560		HCF153	high chlorophyll fluorescence ...		Lus10039571 [exp]	7.2	0.8725
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10014019 [exp]	7.5	0.8268

Compare expression of checked genes

Lus10042470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.