Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17200 242 / 5e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) AT3G14380 171 / 3e-54 Uncharacterised protein family (UPF0497) (.1) AT5G54980 93 / 1e-23 Uncharacterised protein family (UPF0497) (.1) AT4G16442 79 / 3e-18 Uncharacterised protein family (UPF0497) (.1) AT4G15630 71 / 3e-15 Uncharacterised protein family (UPF0497) (.1) AT4G15620 65 / 5e-13 Uncharacterised protein family (UPF0497) (.1) AT2G35760 64 / 9e-13 Uncharacterised protein family (UPF0497) (.1) AT2G27370 63 / 4e-12 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT4G25830 62 / 5e-12 Uncharacterised protein family (UPF0497) (.1) AT5G15290 61 / 1e-11 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026196 [exp] 399 / 5e-144 AT1G17200 241 / 1e-81 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10021788 [exp] 102 / 2e-27 AT5G54980 177 / 6e-57 Uncharacterised protein family (UPF0497) (.1) Lus10034604 [exp] 99 / 3e-26 AT5G54980 176 / 1e-56 Uncharacterised protein family (UPF0497) (.1) Lus10033007 [exp] 66 / 2e-13 AT5G15290 216 / 3e-72 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10005154 [exp] 66 / 3e-13 AT3G55390 233 / 2e-78 Uncharacterised protein family (UPF0497) (.1) Lus10031998 [exp] 64 / 2e-12 AT4G15620 80 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Lus10021333 [exp] 63 / 2e-12 AT3G11550 246 / 1e-83 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10037160 [exp] 63 / 4e-12 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1) Lus10017009 [exp] 64 / 6e-12 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G140200 [exp] 254 / 1e-86 AT1G17200 223 / 3e-74 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.001G436400 [exp] 251 / 3e-85 AT1G17200 245 / 1e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.010G208300 [exp] 113 / 7e-32 AT5G54980 176 / 2e-56 Uncharacterised protein family (UPF0497) (.1) Potri.006G208800 [exp] 71 / 2e-15 AT5G06200 201 / 7e-66 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.017G062100 [exp] 71 / 3e-15 AT4G25040 82 / 6e-20 Uncharacterised protein family (UPF0497) (.1) Potri.008G052451 [exp] 67 / 7e-15 AT5G54980 88 / 2e-23 Uncharacterised protein family (UPF0497) (.1) Potri.016G075400 [exp] 70 / 1e-14 AT5G06200 179 / 2e-57 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.001G323700 [exp] 67 / 7e-14 AT4G15620 75 / 8e-17 Uncharacterised protein family (UPF0497) (.1) Potri.012G104300 [exp] 66 / 1e-13 AT4G25040 97 / 7e-26 Uncharacterised protein family (UPF0497) (.1) Potri.019G100300 [exp] 62 / 4e-12 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10042471 pacid=23153757 polypeptide=Lus10042471 locus=Lus10042471.g ID=Lus10042471.BGIv1.0 annot-version=v1.0 ATGGATCAGAATAGCAGCAAAACAGTAGCAGTAGCAGAGAGGGATGATGATCATCAACAAGATGGTAGCATGAGGAAAGCCGAGAGCATACTGCGGTTGG CGCCGGTTGGATTTTGCATCTCTGCTTTGGTTGTGATGCTTAAGAACTCCCAGACCAACGATTTCGGCTCCCTCTCTTACTCCGATCTTTCTGCTTTCCG TTACTTGGTACACGCAAATGGGATATGCGCAGGGTACGCGCTGTTGTCTGCAGTAGTGGTAGCAATGCCGCGGAGGCCGTCCACAATGTCAAGCGCGTGG ACCTTCTTTTTACTGGACCAGGTGTTCACCTACCTCATCCTCGGTGCAGCCTCTGTTTCGACGGAGGTGCTGTATCTGGCTAAAAACGGGGACATAGACA TAACCTGGAGTGCAGTGTGCGGTTCTTATGGGGGATTCTGCCACAAGGCCGCTGCTTCAGTGATTCTCACTTTCGTTGTCGTAGCTTGGTTCGTTCTTCT CTCGCTTGTCTCTTCATACAAGCTCTTCAGTCGATTCGAGGCCCCTGTTCTCACTTGCCCTGCTTCCAAGGCTGCAGGACTTGAGATTTCTGCGTTTTAG
AA sequence Show only first row Show all	>Lus10042471 pacid=23153757 polypeptide=Lus10042471 locus=Lus10042471.g ID=Lus10042471.BGIv1.0 annot-version=v1.0 MDQNSSKTVAVAERDDDHQQDGSMRKAESILRLAPVGFCISALVVMLKNSQTNDFGSLSYSDLSAFRYLVHANGICAGYALLSAVVVAMPRRPSTMSSAW TFFLLDQVFTYLILGAASVSTEVLYLAKNGDIDITWSAVCGSYGGFCHKAAASVILTFVVVAWFVLLSLVSSYKLFSRFEAPVLTCPASKAAGLEISAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17200			Uncharacterised protein family...		Lus10042471 [exp]	0	1
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10023913 [exp]	1.4	0.9802
AT3G09870			SAUR-like auxin-responsive pro...		Lus10004014 [exp]	1.4	0.9843
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10009075 [exp]	2.4	0.9682
AT4G29990			Leucine-rich repeat transmembr...		Lus10025849 [exp]	3.5	0.9589
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10014411 [exp]	3.7	0.9682
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10000279 [exp]	4.9	0.9710
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015169 [exp]	5.9	0.9685
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10019637 [exp]	6.0	0.9707
AT3G21690			MATE efflux family protein (.1...		Lus10027168 [exp]	7.1	0.9522
AT1G17200			Uncharacterised protein family...		Lus10026196 [exp]	7.6	0.9391

Compare expression of checked genes

Lus10042471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.