Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042472 [exp] 350 / 4e-122 ND / Lus10026194 [exp] 322 / 4e-111 ND / Lus10042412 [exp] 233 / 4e-76 ND / Lus10008920 [exp] 226 / 3e-73 ND / Lus10026257 [exp] 226 / 5e-73 ND / Lus10034839 [exp] 225 / 2e-72 ND / Lus10028894 [exp] 220 / 8e-71 ND / Lus10028570 [exp] 216 / 3e-69 ND / Lus10026258 [exp] 215 / 8e-69 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G002400 [exp] 274 / 4e-92 ND / Potri.001G307100 [exp] 248 / 6e-82 ND / Potri.001G307000 [exp] 248 / 6e-82 ND / Potri.001G306932 [exp] 232 / 9e-76 ND / Potri.002G067000 [exp] 223 / 4e-72 ND / Potri.005G193200 [exp] 211 / 3e-67 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08787 [flax] [poplar] Alginate_lyase2 Alginate lyase
Representative CDS sequence Show only first row Show all	>Lus10042473 pacid=23153892 polypeptide=Lus10042473 locus=Lus10042473.g ID=Lus10042473.BGIv1.0 annot-version=v1.0 ATGAAGATGAGCATCTTGATTATGACGTTGGCTCTGATGGGAAATGTATGCTCGTTAGTTGTATGGGGAAGCAGTAGCGATGATCTTAAAGATGGCTTTG AATCCCTTCCACTGAAACCCGAAAACTTTCGTATCCAGAGGCCGTACGATGTTCCTATAGAAGAAAGGTACAGCTTCATCGACGGAGTCCACAAGTGTTG GGTCTACTCCACTGACAAACCCCACTCTCCCACCAGCATTACTCTGCCCCGTACCGAGATTTCCATCCACGGGTACGCCTACAGATCGGGAGTATGGCAA TTCGAAGGGTATGGGTACGTGCCGAAGGGGACATCAGGAGTTTGCATAATGCAGGTATTCGGGACAAGGTCAATTGCTCCACGTGGAGGTTCCTCCACGC TAATGCTTAGAGTATACAACGGAACTCTCACTTACTACAGGAGAGCCGTATTGGAAAACAACATATACGACAGATGGTTTCGCCTGAATGTGATTCATGA TGCTGATAACTCCAAACTCCAAGTTTACATTGATGGCAATCTCAAGCTGGAAACTACTGGCCGGACGGCCATTTCTCATAACTTCAAATGTGGTGTCTAT GCACAACATAATGACTCCAGTTACATGGAGGCGCGTTGGAAGGATCTCAAGGGTACTGTTGGCAGCAGTGGTTCACGGCGATTATCTGGTATTCCTGGAA ACAACGAAATCGCTCTCTTCATGATGAGAACCCTTGGCCGAAGGAAGTCTTCTGGCAGCTGGTTAAATGCAGAGCTGTTAGCCATTCGTGATGGCTTATC GCTAGTTCAGAGTGTTGGGTTCAAGAAGGTTATTGTGAAATCTGATTCGCTATCAGCAGTCATGTTGGTGAACGACGAGACGGAGAATGCCCACCCCTAC TGGCTATTATCGTGGACATACGTACTTTGCTGCAAGTTTCGGGACATTTCAAGGATCCTCATGTTTTTGAAGAGGCAAACAAAGTGGTTGATTTATTGGG CAGAATGGGTCATGATCAAGTTACTATGA
AA sequence Show only first row Show all	>Lus10042473 pacid=23153892 polypeptide=Lus10042473 locus=Lus10042473.g ID=Lus10042473.BGIv1.0 annot-version=v1.0 MKMSILIMTLALMGNVCSLVVWGSSSDDLKDGFESLPLKPENFRIQRPYDVPIEERYSFIDGVHKCWVYSTDKPHSPTSITLPRTEISIHGYAYRSGVWQ FEGYGYVPKGTSGVCIMQVFGTRSIAPRGGSSTLMLRVYNGTLTYYRRAVLENNIYDRWFRLNVIHDADNSKLQVYIDGNLKLETTGRTAISHNFKCGVY AQHNDSSYMEARWKDLKGTVGSSGSRRLSGIPGNNEIALFMMRTLGRRKSSGSWLNAELLAIRDGLSLVQSVGFKKVIVKSDSLSAVMLVNDETENAHPY WLLSWTYVLCCKFRDISRILMFLKRQTKWLIYWAEWVMIKLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042473 [exp]	0	1
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10021881 [exp]	2.0	0.7745
AT4G18220			Drug/metabolite transporter su...		Lus10028132 [exp]	7.2	0.7294
AT3G47570			Leucine-rich repeat protein ki...		Lus10017028 [exp]	7.3	0.7532
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10016228 [exp]	19.0	0.7174
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10016775 [exp]	23.9	0.7675
AT2G35612			unknown protein		Lus10034745 [exp]	30.4	0.7166
AT5G05390		LAC12	laccase 12 (.1)		Lus10009841 [exp]	33.2	0.7479
					Lus10026442 [exp]	43.1	0.7206
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10018152 [exp]	50.1	0.6703
					Lus10016158 [exp]	50.3	0.6817

Compare expression of checked genes

Lus10042473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.