Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53560 81 / 5e-19 Ribosomal protein L18ae family (.1) AT1G29970 77 / 1e-17 RPL18AA 60S ribosomal protein L18A-1 (.1.2.3) AT1G17080 76 / 4e-17 Ribosomal protein L18ae family (.1) AT3G14595 60 / 2e-11 Ribosomal protein L18ae family (.1) AT5G57060 43 / 2e-05 unknown protein AT4G26060 42 / 5e-05 Ribosomal protein L18ae family (.1) AT1G54217 40 / 0.0001 Ribosomal protein L18ae family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026193 [exp] 215 / 2e-71 AT1G17080 87 / 3e-22 Ribosomal protein L18ae family (.1) Lus10013712 [exp] 79 / 6e-18 AT1G17080 186 / 6e-61 Ribosomal protein L18ae family (.1) Lus10005580 [exp] 77 / 2e-17 AT1G17080 190 / 2e-62 Ribosomal protein L18ae family (.1) Lus10005572 [exp] 69 / 5e-14 AT1G29970 88 / 4e-22 60S ribosomal protein L18A-1 (.1.2.3) Lus10013704 [exp] 67 / 1e-13 AT1G29970 89 / 1e-22 60S ribosomal protein L18A-1 (.1.2.3) Lus10042485 [exp] 65 / 3e-13 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1) Lus10026180 [exp] 62 / 4e-11 AT1G29970 63 / 7e-12 60S ribosomal protein L18A-1 (.1.2.3) Lus10028130 [exp] 60 / 7e-11 AT1G29970 150 / 6e-45 60S ribosomal protein L18A-1 (.1.2.3) Lus10005573 [exp] 42 / 3e-05 ND 47 / 8e-08
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G380200 [exp] 75 / 8e-17 AT1G17080 127 / 3e-38 Ribosomal protein L18ae family (.1) Potri.001G198700 [exp] 46 / 1e-06 AT4G26060 107 / 3e-31 Ribosomal protein L18ae family (.1) Potri.003G044400 [exp] 43 / 1e-05 AT5G57060 103 / 3e-30 unknown protein Potri.006G146300 [exp] 40 / 0.0004 AT4G26060 152 / 2e-48 Ribosomal protein L18ae family (.1) Potri.018G050900 [exp] 39 / 0.001 AT4G26060 151 / 4e-48 Ribosomal protein L18ae family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042474 pacid=23153485 polypeptide=Lus10042474 locus=Lus10042474.g ID=Lus10042474.BGIv1.0 annot-version=v1.0 ATGAGCGGAGACAAGGGCAAAAGAGGAAATGGGATGGCAATGGACAACCAGCAAAGTCTCCAAGGAGTTAGCATCGTAACTGAGGCGGCCTATCATGCAT CTTCTCTCCCTACTTCCCAGCCTCCTTACAACGTTTATGCACCCAATCCTAATTCCCTTCCTGTTACCGGTCATGTTGTTGTTCAGCGAGGATCCTCAGA TATGCCTTGCTGTGGGATTGGTCTTGGTTGGTTCTTGTTTGTATTGGGATTCATATTGGGAGCGATTCCATGGTATGCTGGGGCATGCGTTCTTATGTGT GCCAAGTATGACCGACGTGAGAAGGCTGGTTTGATTGCTTGCGCAATTGTTGCTGGTTTGGTGACGGCTCTTGTAGTCGTTCTCATCATAATATCCATCG TCGGAGTCCTACTTAACAATGGATTGGATCTCGATGGAAGAGAAACCGTTTTGTATTTAGGGTTCAACTCCTGCAAAAATCAAAATCGGATCTCGAAGTT GATTGAGGGTTTGTTGAGGAGGTGGTGGTCGGGAGGTGGGTGGGTGGAGTTGGACGTGGATGTAGATGTGACGGTAGTGATAGAGGCGGCAGGGTTAGTT GCAGGTGTAGGTGCTACGAAAACCAGTCTCCGAATGCGAATACGTTGTCGTGGATACGCGCAACCGGACGCTGATATTTATCCGCGACAACCGCTGTCAT GA
AA sequence Show only first row Show all	>Lus10042474 pacid=23153485 polypeptide=Lus10042474 locus=Lus10042474.g ID=Lus10042474.BGIv1.0 annot-version=v1.0 MSGDKGKRGNGMAMDNQQSLQGVSIVTEAAYHASSLPTSQPPYNVYAPNPNSLPVTGHVVVQRGSSDMPCCGIGLGWFLFVLGFILGAIPWYAGACVLMC AKYDRREKAGLIACAIVAGLVTALVVVLIIISIVGVLLNNGLDLDGRETVLYLGFNSCKNQNRISKLIEGLLRRWWSGGGWVELDVDVDVTVVIEAAGLV AGVGATKTSLRMRIRCRGYAQPDADIYPRQPLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53560			Ribosomal protein L18ae family...		Lus10042474 [exp]	0	1
					Lus10007598 [exp]	65.4	0.7913
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10013572 [exp]	77.0	0.7891
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10016708 [exp]	95.8	0.7582
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10031609 [exp]	127.2	0.7750
AT5G22210			unknown protein		Lus10043407 [exp]	141.4	0.7298
AT1G78780			pathogenesis-related family pr...		Lus10018919 [exp]	217.6	0.7479

Compare expression of checked genes

Lus10042474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.