Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14590 741 / 0 NTMCTYPE6.2 ,NTMC2T6.2 ,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G53590 723 / 0 NTMCTYPE6.1 ,NTMC2T6.1 ,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G18370 74 / 2e-13 NTMCTYPE3, ATSYTF ,NTMC2T3 ,NTMC2TYPE3 C2 domain-containing protein (.1) AT1G03370 69 / 1e-11 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT5G11100 65 / 1e-10 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 64 / 3e-10 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G20990 60 / 4e-09 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT3G61300 59 / 2e-08 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G20080 56 / 7e-08 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 56 / 9e-08 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026192 [exp] 1336 / 0 AT1G53590 771 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10005578 [exp] 949 / 0 AT1G53590 812 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10013710 [exp] 937 / 0 AT1G53590 817 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009032 [exp] 76 / 5e-14 AT3G18370 907 / 0.0 C2 domain-containing protein (.1) Lus10009672 [exp] 75 / 2e-13 AT3G18370 840 / 0.0 C2 domain-containing protein (.1) Lus10005069 [exp] 70 / 4e-12 AT2G20990 766 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10013563 [exp] 67 / 3e-11 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038117 [exp] 67 / 3e-11 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10017268 [exp] 67 / 3e-11 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G379800 [exp] 768 / 0 AT1G53590 833 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.005G241700 [exp] 80 / 3e-15 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.015G046700 [exp] 72 / 1e-12 AT3G18370 968 / 0.0 C2 domain-containing protein (.1) Potri.002G019800 [exp] 71 / 2e-12 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.012G056000 [exp] 71 / 2e-12 AT3G18370 971 / 0.0 C2 domain-containing protein (.1) Potri.004G174600 [exp] 69 / 8e-12 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.009G134200 [exp] 68 / 1e-11 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.006G003200 [exp] 66 / 7e-11 AT1G03370 1372 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.018G124000 [exp] 63 / 5e-10 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.016G003900 [exp] 63 / 8e-10 AT1G03370 1378 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10042475 pacid=23153464 polypeptide=Lus10042475 locus=Lus10042475.g ID=Lus10042475.BGIv1.0 annot-version=v1.0 ATGATGCTGTTTAATCCGATGTATCTTGAGTTGATTCTTTTTAACTCTTTTGGGAAGGTTCATGAGAGATATCTAACGAAATTGAGGAAGAAACTGCAGT ACGAAAGAACGAAACAAGCTAATCGGAGGAGGGTGCTCTCTGATTCTGAAACAGTGAGGTGGCTGAACCATGCTGTGGAAAAGATATGGCCCATTTGTAT GGAAGATATCACTTCACAGAAGATTCTTCTCCCCATCATTCCTTGGTTTTTGGATAAGTATAAACCATGGACTGCTCACTTATCTGGAGCGTGTTCTGTA CAGAAAAAGGCAGTGGTTCAGCATTTATATATGGGGAGAGACCCGCCAATGTTCACAGATATGAGGGTTCTTCGCCAATGTACTGGTGATGATCACTTGG CATTGGAAATGGGACTAAAATTTTGCACAGCTGATGACATGAGTGCAATTCTCGCTGTGAAATTAAGGAGAATGCTGGGATTTGGGATGTGGACAAAATT GCATATCACAGGCATGCAAGTGGAGGGAAAGGTGTTGGTTGGAGTAAAATTTCTACGTCGCTGGCCGTTCATTAGACGTTTACGAGTATGCTTTGCTGAG CCACCCTATTTCACAATGACAGTAAAACCCATCTTTACTCATGGGGTCGATGTTACTGTGCTTCCAGGGATTGCTGGGTGGCTAGACAAACTTCTCTCAA TGGCATTTGAGCAGACTCTGGTTCAGCCCAATATGCTAGTAGCTGACGTGGAGAAATTAGTTTCACCTTGTGAAGGTAAAATTCCAGCTTATTGTTTGGA TGTAATCTGCAACAGTGAAACTAGGATGGTTTGTGACATTGGGCGGAATTGCAAGTTCTTATACGATGTGATATACTTTTTGCCAGAAAATTGGTTCTCT GTGCATGAGGAGAAACCCATTGCTTTCGCGAAACTTGAAGTTATCGAGGCATCTGACATGAAACCATCAGATTTAAATGGTTTAGCTGATCCATATGTGA AAGGAAAACTTGGCCCTTATGGATTCAGAACAAAGACTCAAAGGAAAACTTTGGCTCCAAAATGGCTCGAGGAATTCGAAATCCCTGTCGTTACATGGGA ATCGCCAAATGTGTTAGCAATTGAAGTTTGTGACAAAGACCACTTCATCGATGATTCCCTTGGGAATTGTACTGTTACTATCAATGATCTAAGAGATGGT GAAAGACATGACATGTGGTTGCCCCTTCAGAACATCAAAATTGGGAGACTGCATCTTGCGCTAACTGTCCGCGAAGTAAAGGAGGATGATGCGTATCCCG TCGAAGGAGAAAACTTGAACAAGCAAGAAGTTCAGGAATCGTTTGCGAACAACATTGTTAATAGATCTTCCTTTTCATCCATAACGTCAGAAGTATCTCA AAAAGTAGCGGATAATTTCGAGCCAATCAACATCGAAGGACAACAGGAGACTGGGGTGTGGATCCATCACCCGGGAACTGAGGTGTCACAGACTTGGGAG CCAAGAAAAGGGAAAACCCGGCAAGTCGAGTATGCTCAGAATGGGAAAGCATTAGGTGATTCATTTGGCAGCAGTATTTCGTCTGGATTACAATGCAACG ACAGCAGCAGTACTGATGAAGCTACAGAGGGTAAAAAGCCAGGAAACAGACTCCGGCGTGGTCTACTCAAGATAACAGCAGCGTTACGTAAAGTTCCGAA AGATGGCAGTAATCCAGGCATTAGCGAGGAAACTGTTCAATCTCCTTTTGCCAACATTATAGCAGCGAGCAATGAAAAAGGAGGCAGGGTGAAGTATGTC GTAGAAGACAGCCTCTCTGGACGGATTATTGGCAAGGATTCAAAGCAACTAGAGTCGATTCCGGATTCAAATTCAGTTGGGAGCCCGGGAAGGGGAAACA AGAAAGAGAAAGCAAAATGCATCCTGAAACAGATGGAGAGGTCAGCTCGTAGCTTCAAGCACATGCTGTCTAGGAAAGGATCGAGACAGTCTCGAGGCGA TCCACAGTTAGGTGTGGAAGTCGAAATGGATGCAGAGTTTGACACTTCTGATGAAGACGAACAGCCTCATCGAAGGCCCATCGTTGCCAATCCCATTGTA TCGTGTTCCAGTAGCAATGATGATTGCGATAATGCAAAGGAGAACAGCACTGAAAGTGGTGCCGTTGAAAATTTGATGAAGAATGAACTCCGAAGTAATG CGAGTAATGGTGAGGAAGGCATAAAGAGTAAGGTGGTGGATACCTCGGAAGAACGTTGTAAGATGCTAGAAGAGGCTTGGCAGCGTAGTAAAGAATCAGT GGAACGTAACGTGGAAAACGAGAAGATGTAA
AA sequence Show only first row Show all	>Lus10042475 pacid=23153464 polypeptide=Lus10042475 locus=Lus10042475.g ID=Lus10042475.BGIv1.0 annot-version=v1.0 MMLFNPMYLELILFNSFGKVHERYLTKLRKKLQYERTKQANRRRVLSDSETVRWLNHAVEKIWPICMEDITSQKILLPIIPWFLDKYKPWTAHLSGACSV QKKAVVQHLYMGRDPPMFTDMRVLRQCTGDDHLALEMGLKFCTADDMSAILAVKLRRMLGFGMWTKLHITGMQVEGKVLVGVKFLRRWPFIRRLRVCFAE PPYFTMTVKPIFTHGVDVTVLPGIAGWLDKLLSMAFEQTLVQPNMLVADVEKLVSPCEGKIPAYCLDVICNSETRMVCDIGRNCKFLYDVIYFLPENWFS VHEEKPIAFAKLEVIEASDMKPSDLNGLADPYVKGKLGPYGFRTKTQRKTLAPKWLEEFEIPVVTWESPNVLAIEVCDKDHFIDDSLGNCTVTINDLRDG ERHDMWLPLQNIKIGRLHLALTVREVKEDDAYPVEGENLNKQEVQESFANNIVNRSSFSSITSEVSQKVADNFEPINIEGQQETGVWIHHPGTEVSQTWE PRKGKTRQVEYAQNGKALGDSFGSSISSGLQCNDSSSTDEATEGKKPGNRLRRGLLKITAALRKVPKDGSNPGISEETVQSPFANIIAASNEKGGRVKYV VEDSLSGRIIGKDSKQLESIPDSNSVGSPGRGNKKEKAKCILKQMERSARSFKHMLSRKGSRQSRGDPQLGVEVEMDAEFDTSDEDEQPHRRPIVANPIV SCSSSNDDCDNAKENSTESGAVENLMKNELRSNASNGEEGIKSKVVDTSEERCKMLEEAWQRSKESVERNVENEKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14590		NTMCTYPE6.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10042475 [exp]	0	1
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024648 [exp]	1.0	0.9294
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Lus10032117 [exp]	3.2	0.9246
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10021199 [exp]	5.0	0.8814
AT5G46060			Protein of unknown function, D...		Lus10013944 [exp]	5.2	0.8979
AT3G11040		AtENGase85B	Endo-beta-N-acetyglucosaminida...		Lus10007526 [exp]	5.5	0.9110
AT1G67550		URE	urease (.1)		Lus10015814 [exp]	6.0	0.9181
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10002885 [exp]	9.4	0.9013
AT2G27370		CASP3	Casparian strip membrane domai...		Lus10017008 [exp]	10.2	0.9037
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	10.4	0.9210
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036353 [exp]	11.0	0.8967

Compare expression of checked genes

Lus10042475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.