Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14580 386 / 2e-132 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G01400 135 / 3e-35 unknown protein AT1G07740 124 / 4e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16420 124 / 7e-31 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G46100 122 / 1e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 121 / 1e-29 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G18475 118 / 7e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 119 / 9e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 118 / 1e-28 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 116 / 5e-28 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026191 [exp] 713 / 0 AT3G14580 391 / 2e-134 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002675 [exp] 134 / 5e-34 AT4G01400 570 / 0.0 unknown protein Lus10027914 [exp] 125 / 5e-31 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 124 / 1e-30 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 122 / 7e-30 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 119 / 6e-29 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009023 [exp] 117 / 3e-28 AT3G48810 543 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015397 [exp] 115 / 6e-28 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 115 / 1e-27 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G379500 [exp] 456 / 1e-159 AT3G14580 442 / 2e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G105900 [exp] 145 / 1e-38 AT4G01400 576 / 0.0 unknown protein Potri.010G148700 [exp] 133 / 7e-34 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G031600 [exp] 131 / 2e-33 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G204100 [exp] 123 / 5e-31 AT1G07740 502 / 2e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 124 / 1e-30 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G108500 [exp] 121 / 3e-30 AT1G53330 483 / 1e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 120 / 3e-29 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 120 / 3e-29 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G154800 [exp] 120 / 3e-29 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042476 pacid=23153824 polypeptide=Lus10042476 locus=Lus10042476.g ID=Lus10042476.BGIv1.0 annot-version=v1.0 ATGATCCGCCATTTCTGTCTTCACGAAATACCTCGCAAACTATTCTGCTCTCACTCTGGTTTTTCATCAACTCTCACAACCCGAATTTCTTCCTCCTCCT CCTCTTCTTCTTATTATTATTCCACAACCCAACCAACTGCAGCTCCTCATCCCAAACTCAGCGGCAAAGACTGGCTTTCCCCCAACGAAGTCCTTAAAAT CTTCGAATCAATCATCGACCCAATCTCCCTCACATCCTCCTGGACTCAATACTCTCTCCGCCGAGACTTCAAGCCAAACGAGCCCCTCCTCACTCTCCTC ATCACCAAGCTCGGCCACTCCAAAAACTTCGACGCCATTGAAACCGTCATGGAAAGCATCAAGCTTCGCAAGCTCCCACTCGCCAATCCCTTGTCCGACG ACTTCTTCTACAACGTCATCAAGATTTACGGCCATTCCGCTGGCAGGATCAGGAGGGCGATAGAAACTCTGCTGGACATGCCTCAGCTTTTCAACTGTTG GCCCAAGGTAAAGACCTTCAACCTGGTTCTCAACTTGCTGGTATCCGCCAAGATCTTCGACGTTGCTCGGGACGTTTATTTAAGAGCTCCGATGCTAGGT GTCGAAATCGACGCTTGCTGTCTCAACATTCTGATCAAAGGGATGTGCGAGAATGGAGATTTGGAAGGTGCACACAACGTGCTCGACGAATTTCCTCAGC AGAGGTGTGTTCCGAATGCCAGGACGTTTTCCACTTTGATGCACTGCTTCTGCAGTAAAGGGGACTTGGATGCTGCATTCAAGCTGCTGGAGCGGATGGA AAGGGAAGGGGTGGATGCAGATACGGTGACGTTTAATGTTGTGATATCGGGGTTGAGGAAACAGGGGAGGATTGAGGAAGGAATGAGGGTTTTGGAGGGG ATGAAAGGGAAAGGGTGTGAACCCAATGAAGCATCGTATCAGGAGGTTTTGTATGGTTTGCTTGATGATGGGAGGTTCGTTGAGGCAAAGGCGTTTGCGG GTAGAATGATTTGTCAAGGATTCAACCCAAGTTTTGTGTCGTATAAGAAGCTGATCCATGGGATTTGTGGAGAAGGGTTGATTGGTGAGGAATTGGACTG GGTTTTAAAGCAAATGGTGAAGCAAGGGTTTGTTCCTAAAATGGGTTCGTGGAAGCAGATGGTTCAAACTGTGTTTGCTGTTGGTAGCGCATCAGAGTTT TCATTGACAAGTGTTATTGGCAGCTAG
AA sequence Show only first row Show all	>Lus10042476 pacid=23153824 polypeptide=Lus10042476 locus=Lus10042476.g ID=Lus10042476.BGIv1.0 annot-version=v1.0 MIRHFCLHEIPRKLFCSHSGFSSTLTTRISSSSSSSSYYYSTTQPTAAPHPKLSGKDWLSPNEVLKIFESIIDPISLTSSWTQYSLRRDFKPNEPLLTLL ITKLGHSKNFDAIETVMESIKLRKLPLANPLSDDFFYNVIKIYGHSAGRIRRAIETLLDMPQLFNCWPKVKTFNLVLNLLVSAKIFDVARDVYLRAPMLG VEIDACCLNILIKGMCENGDLEGAHNVLDEFPQQRCVPNARTFSTLMHCFCSKGDLDAAFKLLERMEREGVDADTVTFNVVISGLRKQGRIEEGMRVLEG MKGKGCEPNEASYQEVLYGLLDDGRFVEAKAFAGRMICQGFNPSFVSYKKLIHGICGEGLIGEELDWVLKQMVKQGFVPKMGSWKQMVQTVFAVGSASEF SLTSVIGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14580			Pentatricopeptide repeat (PPR)...		Lus10042476 [exp]	0	1
AT4G00440			Protein of unknown function (D...		Lus10036356 [exp]	14.5	0.6080
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10030168 [exp]	16.8	0.5609
AT1G32370		TTM1, TOM2B	tobamovirus multiplication 2B ...		Lus10030942 [exp]	29.5	0.5411
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10005517 [exp]	34.0	0.5353
					Lus10029080 [exp]	37.1	0.4414
					Lus10005225 [exp]	144.9	0.4261
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10009144 [exp]	177.1	0.4250
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10007603 [exp]	205.0	0.4510
					Lus10001193 [exp]	229.7	0.4214

Compare expression of checked genes

Lus10042476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.