Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66310 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G16930 74 / 2e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G69630 69 / 1e-12 F-box/RNI-like superfamily protein (.1) AT1G60400 68 / 3e-12 F-box/RNI-like superfamily protein (.1) AT5G60610 66 / 7e-12 F-box/RNI-like superfamily protein (.1) AT4G03220 65 / 2e-11 Protein with RNI-like/FBD-like domains (.1) AT1G78840 63 / 1e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G13960 61 / 4e-10 F-box/RNI-like superfamily protein (.1) AT1G66290 60 / 1e-09 F-box/RNI-like superfamily protein (.1) AT1G66300 60 / 1e-09 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026190 [exp] 561 / 0 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10007058 [exp] 438 / 4e-154 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029357 [exp] 252 / 8e-81 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1) Lus10001507 [exp] 243 / 2e-77 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034161 [exp] 238 / 7e-76 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024696 [exp] 233 / 1e-73 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10002819 [exp] 226 / 3e-71 AT5G02910 77 / 1e-15 F-box/RNI-like superfamily protein (.1.2) Lus10024695 [exp] 225 / 1e-70 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10002239 [exp] 208 / 5e-64 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 147 / 6e-41 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 122 / 2e-31 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G011200 [exp] 121 / 4e-31 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104200 [exp] 92 / 1e-20 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 92 / 3e-20 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 87 / 5e-19 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.013G151200 [exp] 64 / 5e-11 AT4G03220 417 / 1e-141 Protein with RNI-like/FBD-like domains (.1) Potri.015G002001 [exp] 56 / 9e-09 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G024300 [exp] 56 / 3e-08 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024200 [exp] 54 / 7e-08 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10042477 pacid=23153606 polypeptide=Lus10042477 locus=Lus10042477.g ID=Lus10042477.BGIv1.0 annot-version=v1.0 ATGGCTGCGATCATGCTCCGTGGAGAGGATTCCACCGATAGGCTAAGCAATCTTCCGCACTCCATTCTCTATCTCATCGTTTCATTTCTTGACACCAAAT CTGCTGTTCAAACATCTGTACTATCCCGATCATGGAGATGCGTTTGGAAACACGTTCCTGTTCTCGATCTGGATTTCTGTTCATTCGGCAAAGATACGAG TTTCAAATTTTTCATTGAAAGGGTTTTGTCACTCCGCTATCCCCTTCCTCTCAGCAAGATCAGCTACGTGGACGCTGTGAATTCACTTGAAGAAGATAAT AGCCTGTGTGTACAGGTCATGAGATATGCCGTCTCTCGTGACGTTCAACATTTGGCTATGAACTTGTCATGTGATTCGTTTTACTCCTACGGATTCTCTA ATTTGCTTGACTCTCTATCAGGCTGCAATCTGAAAACTCTAGAACTGAGCGGTTTTTACATGGATAGTGAATTTCAGTCTTTTGGGTTTCAGCAGATGAC AACGTTAGAGTTGCAGGGGTGTGCGCTAATTCCTGAACTTTGTCTAACTTACGAACCTTTCTCTAATTTTCCCAGTCTGAAAACACTGGTGCTGGATGCT TGTCCCGCCGATTCTGATAACTATGACAGATTCAGGATTTCTGGAGAACAGTTGCACTGTCTGAAATTGGCTCGTATGGACGCGCACAAGATGGAAATAT ACGCTCCCAAGCTCAAATCCTTCACCCTTTGGGATTTTGTGAATAAATTGAAATTCACAGAGCTAACCCTTCCTTCCCTTGATCACGTTGATATTCGGAA ATGTGACAGGCTACAGGTCTATGAAACTGACAAGAAAGATTGGGTTGTCTTGTTCCAAGGTCTGCATAATGTAAAATCTCTGACACTAAATGATAGGATC CTCGAGAGGCTCGGTCGTATTTCCAAGTTTTTGGAACAACTACACTCTCCTTTTAAAAGATTGGAGAAGTTGATTATTTGGTGCAACAACTCACCTCACA AAGTGGTGGACTCTGACAACATACCTTACCAGGTGGTGAATTACTTTCTTAAAGGATCTGTAGCTACAAATCCAAGTATCAAGATTTTGCTAGAGTAG
AA sequence Show only first row Show all	>Lus10042477 pacid=23153606 polypeptide=Lus10042477 locus=Lus10042477.g ID=Lus10042477.BGIv1.0 annot-version=v1.0 MAAIMLRGEDSTDRLSNLPHSILYLIVSFLDTKSAVQTSVLSRSWRCVWKHVPVLDLDFCSFGKDTSFKFFIERVLSLRYPLPLSKISYVDAVNSLEEDN SLCVQVMRYAVSRDVQHLAMNLSCDSFYSYGFSNLLDSLSGCNLKTLELSGFYMDSEFQSFGFQQMTTLELQGCALIPELCLTYEPFSNFPSLKTLVLDA CPADSDNYDRFRISGEQLHCLKLARMDAHKMEIYAPKLKSFTLWDFVNKLKFTELTLPSLDHVDIRKCDRLQVYETDKKDWVVLFQGLHNVKSLTLNDRI LERLGRISKFLEQLHSPFKRLEKLIIWCNNSPHKVVDSDNIPYQVVNYFLKGSVATNPSIKILLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10042477 [exp]	0	1
AT3G58140			phenylalanyl-tRNA synthetase c...		Lus10028547 [exp]	15.8	0.6475
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Lus10024288 [exp]	16.2	0.6934
AT5G57670			Protein kinase superfamily pro...		Lus10015516 [exp]	20.7	0.6790
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10036961 [exp]	42.3	0.5528
AT4G36150			Disease resistance protein (TI...		Lus10004074 [exp]	44.3	0.5990
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10014161 [exp]	58.3	0.5665
AT2G27550		ATC	centroradialis (.1)		Lus10020600 [exp]	61.3	0.6317
AT4G30660			Low temperature and salt respo...		Lus10036592 [exp]	64.9	0.5949
AT1G72200			RING/U-box superfamily protein...		Lus10036466 [exp]	68.8	0.6059
AT3G10540			3-phosphoinositide-dependent p...		Lus10017448 [exp]	75.6	0.5719

Compare expression of checked genes

Lus10042477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.