Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08420 425 / 2e-148 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026187 [exp] 605 / 0 AT5G08420 437 / 5e-153 RNA-binding KH domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G065500 [exp] 484 / 7e-172 AT5G08420 416 / 1e-144 RNA-binding KH domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042479 pacid=23153904 polypeptide=Lus10042479 locus=Lus10042479.g ID=Lus10042479.BGIv1.0 annot-version=v1.0 ATGGCGGACGCAGTAGGAAATAGTGAAATTCAGGTTAAGGATGGAAATAAGAAGCACAAGGGCAAGCACGATAAGCCGAAACCATGGGACGATGATCCTA ACATTGACCGTTGGAAAGTTGAGAAGTTCGATCCTTCATGGAACGAAGGCGGCATGCTCGTCGAGAGCTCCTTTTCCACCCTCTTTCCTCAGTACAGAGG AAAGTACTTGCAGGATGTTTGGCCAATGGTGAAATCTGCATTGAAAGAATATGGCATTTCAGGCGAACTGAACCTCGTTGAGGGTTCGATGACTGTTTCA ACTACTATCAAGACTAGGGACCCTTATATAATCATCAAAGCGAGGGATCTTCTTAAGTTGCTATCCAGAAGTGTCCCTGCACCTCAGGCTATCAAGATTC TCAATGACGAAATGCAATGTGATATCATCAAGATTGGTGGTTTTGTTCATAATAAGGAACGTTTTGTCAAACGAAGGCAACATCTTGTTGGGGCAAATTC AGCTACTTTAAAGGCGCTTGAAATCTTGACAGGCTGTTATATTCTAGTCCAGGGGAACACCGTTGCTGCTATGGGTTCATTTAAAGGATTAAAACAAGTT AGAAGGATTGTGGAGGAATGTATGCAGAACAAGATGCATCCTGTGCACCATATAAAAATTCTTATGATGAAAAAAGAGCTTGAACAAAACCCCTTGCTGA AGAATGAAAACTGGGATAGATTTCTTCCGAAATACAATAAGAAGAATGTGCAACGAAAGAAGAATAAGAAGATAGAAAAGAAGGAATACACTCCATTTCC TCCTCCCCAACCGCCTAGTAAGGTTGATATTCAATTAGAGACAGGAGAATACTTCATGAGTGACCACAAGAAGCAATCTAATGCATGGAGAGATAAACTG GAGAAGCAGGCCCAAAAGTCTGCTGAAAACAAGAGAAAAAGAGAAGAGGCATTTAAACCTCCAGAGGAGCCCGTCAAGGCACACTCAGATGACAAGGGCA AAGACCTAGCCAGTACGACCGCTTCCGTTAAGCAAAAAGCAAAAGATTTTGGGAAGAAGAAAAAGGGGGAGAATGTCAACGCAGAGGATTATATAGCAGT AGCTTCAGGTGAACCATCAAAGAAGAAAAAAGCAAGGAGAAGTTAG
AA sequence Show only first row Show all	>Lus10042479 pacid=23153904 polypeptide=Lus10042479 locus=Lus10042479.g ID=Lus10042479.BGIv1.0 annot-version=v1.0 MADAVGNSEIQVKDGNKKHKGKHDKPKPWDDDPNIDRWKVEKFDPSWNEGGMLVESSFSTLFPQYRGKYLQDVWPMVKSALKEYGISGELNLVEGSMTVS TTIKTRDPYIIIKARDLLKLLSRSVPAPQAIKILNDEMQCDIIKIGGFVHNKERFVKRRQHLVGANSATLKALEILTGCYILVQGNTVAAMGSFKGLKQV RRIVEECMQNKMHPVHHIKILMMKKELEQNPLLKNENWDRFLPKYNKKNVQRKKNKKIEKKEYTPFPPPQPPSKVDIQLETGEYFMSDHKKQSNAWRDKL EKQAQKSAENKRKREEAFKPPEEPVKAHSDDKGKDLASTTASVKQKAKDFGKKKKGENVNAEDYIAVASGEPSKKKKARRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08420			RNA-binding KH domain-containi...		Lus10042479 [exp]	0	1
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10027681 [exp]	4.6	0.8717
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10043279 [exp]	6.9	0.8415
AT5G08320			unknown protein		Lus10010178 [exp]	9.8	0.7958
AT5G12410			THUMP domain-containing protei...		Lus10019037 [exp]	10.0	0.8277
					Lus10011965 [exp]	14.7	0.8085
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Lus10008988 [exp]	22.0	0.8327
AT5G08630			DDT domain-containing protein ...		Lus10029550 [exp]	29.7	0.7799
AT5G62950			RNA polymerase II, Rpb4, core ...		Lus10039583 [exp]	30.0	0.7959
AT3G22320		RPB5A, NRPD5, N...	RNA POLYMERASE II FIFTH LARGES...		Lus10013639 [exp]	32.7	0.7918
AT3G52040			unknown protein		Lus10039586 [exp]	38.0	0.7908

Compare expression of checked genes

Lus10042479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.